SMTL ID : 4rg1.1

Methyltransferase domain of C9orf114

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.86 Å

Oligo State

homo-dimer

Ligands

2 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 18 residues within 4Å: Chain A: T.226, S.227, E.228, R.229, F.248, G.249, G.250, L.251, Q.252, G.253, L.254, V.277, N.278, T.279, Q.283, I.288, T.290, A.293 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:T.226, A:T.226, A:G.249, A:G.250, A:L.251, A:L.254, A:N.278, A:T.279 Water bridges: A:S.227, A:E.228, A:N.278, A:T.279, A:T.279, A:I.288 Salt bridges: A:R.229 SAH.6: 18 residues within 4Å: Chain B: T.226, S.227, E.228, R.229, F.248, G.249, G.250, L.251, Q.252, G.253, L.254, V.277, N.278, T.279, Q.283, I.288, T.290, A.293 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:T.226, B:G.249, B:G.250, B:L.251, B:L.254, B:N.278, B:T.279 Water bridges: B:S.227, B:E.228, B:N.278, B:I.288 Salt bridges: B:R.229

4 x 15P: POLYETHYLENE GLYCOL (N=34)(Non-functional Binders)

15P.2: 7 residues within 4Å: Chain A: Q.84, E.87, R.163, Y.199, T.200, V.201 Ligands: 15P.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.84, A:E.87 Water bridges: A:S.186 15P.3: 9 residues within 4Å: Chain A: D.47, E.128, S.186, Q.187, W.197, G.198, T.200, P.215 Ligands: 15P.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.186, A:Q.187 Water bridges: A:R.163, A:R.190 15P.8: 8 residues within 4Å: Chain B: D.47, S.186, Q.187, W.197, G.198, T.200, P.215 Ligands: 15P.9 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:S.186, B:S.186, B:Q.187 Water bridges: B:R.163, B:T.200 15P.9: 10 residues within 4Å: Chain B: V.77, A.80, Q.84, E.87, R.163, Y.199, T.200, V.201, L.203 Ligands: 15P.8 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:Q.84, B:T.200 Water bridges: B:E.87, B:E.87, B:E.128, B:S.186, B:S.186

2 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.4: 5 residues within 4Å: Chain A: A.258, D.259, E.265, V.266, A.267 No protein-ligand interaction detected (PLIP) UNX.5: 3 residues within 4Å: Chain A: E.228, Q.283, R.286 No protein-ligand interaction detected (PLIP)

1 x PGO: S-1,2-PROPANEDIOL(Non-covalent)

PGO.7: 6 residues within 4Å: Chain B: Y.32, G.35, Q.36, R.39, L.109, N.110 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:Y.32 Hydrogen bonds: B:N.110, B:N.110, A:E.292, A:E.292

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zeng, H. et al., The Crystal Structure of Human C9orf114 in complex with S-adenosyl-homocysteine. To be Published

Release Date

2014-10-15

Peptides

C9orf114: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C9orf114