SMTL ID : 4rgp.1

Crystal Structure of Uncharacterized CRISPR/Cas System-associated Protein Csm6 from Streptococcus mutans

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

7 x CA: CALCIUM ION(Non-covalent)

CA.1: 1 residues within 4Å: Chain A: N.239 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:N.239, H2O.1, H2O.1, H2O.1, H2O.1 CA.2: 3 residues within 4Å: Chain A: E.44, E.47 Chain B: D.207 5 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: B:D.207, A:E.44, A:E.47, H2O.4, H2O.5 CA.3: 3 residues within 4Å: Chain A: D.129, A.130, D.136 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.129, A:A.130, A:D.136, H2O.2, H2O.2 CA.5: 2 residues within 4Å: Chain A: E.7 Chain B: E.7 5 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: B:E.7, A:E.7, H2O.2, H2O.5, H2O.6 CA.6: 1 residues within 4Å: Chain B: N.239 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:N.239, H2O.4, H2O.4, H2O.4, H2O.4 CA.7: 3 residues within 4Å: Chain A: D.207 Chain B: E.44, E.47 5 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: B:E.44, B:E.47, A:D.207, H2O.2, H2O.5 CA.8: 3 residues within 4Å: Chain B: D.129, A.130, D.136 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.129, B:D.136, H2O.5, H2O.6

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.4: 3 residues within 4Å: Chain A: L.187, K.225, Q.228 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.225, A:Q.228 Water bridges: A:N.184

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.9: 4 residues within 4Å: Chain B: Q.61, E.64, S.70, L.72 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.61, B:E.64 GOL.10: 2 residues within 4Å: Chain B: D.141, D.145 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.145

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y. et al., Crystal Structure of Uncharacterized CRISPR/Cas System-associated Protein Csm6 from Streptococcus mutans. To be Published

Release Date

2014-12-24

Peptides

Csm6_III-A: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Csm6_III-A