SMTL ID : 4rhi.1

Crystal structure of SeMet-labeled wild-type T. brucei arginase-like protein in P321 space group

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

homo-hexamer

Ligands

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: R.58, P.60, F.64, N.300, V.301, G.302, A.305 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.58, A:R.58, A:Y.289, A:G.302 GOL.2: 6 residues within 4Å: Chain B: R.58, Y.289, N.300, V.301, G.302, A.305 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.58, B:Y.289, B:Y.289, B:G.302 Water bridges: B:Y.296 GOL.3: 7 residues within 4Å: Chain C: R.58, P.60, F.64, N.300, V.301, G.302, A.305 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:R.58, C:R.58, C:Y.289, C:G.302 GOL.4: 6 residues within 4Å: Chain D: R.58, Y.289, N.300, V.301, G.302, A.305 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:R.58, D:Y.289, D:Y.289, D:G.302 Water bridges: D:Y.296 GOL.5: 7 residues within 4Å: Chain E: R.58, P.60, F.64, N.300, V.301, G.302, A.305 4 PLIP interactions: 4 interactions with chain E Hydrogen bonds: E:R.58, E:R.58, E:Y.289, E:G.302 GOL.6: 6 residues within 4Å: Chain F: R.58, Y.289, N.300, V.301, G.302, A.305 5 PLIP interactions: 5 interactions with chain F Hydrogen bonds: F:R.58, F:Y.289, F:Y.289, F:G.302 Water bridges: F:Y.296

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hai, Y. et al., Crystal Structure of an Arginase-like Protein from Trypanosoma brucei That Evolved without a Binuclear Manganese Cluster. Biochemistry (2015)

Release Date

2014-12-31

Peptides

Arginase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

Arginase

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