SMTL ID : 4rhl.1

Crystal structure of T. brucei arginase-like protein triple mutant S149D/R151H/S226D bound with Mn2+

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

homo-hexamer

Ligands

6 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: D.169, H.171, D.244, D.246 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.169, A:H.171, A:D.244, A:D.246, H2O.1 MN.3: 4 residues within 4Å: Chain B: D.169, H.171, D.244, D.246 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.169, B:H.171, B:D.244, B:D.246, H2O.2 MN.5: 4 residues within 4Å: Chain C: D.169, H.171, D.244, D.246 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.169, C:H.171, C:D.244, C:D.246, H2O.2 MN.7: 4 residues within 4Å: Chain D: D.169, H.171, D.244, D.246 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:D.169, D:H.171, D:D.244, D:D.246, D:D.246 MN.9: 4 residues within 4Å: Chain E: D.169, H.171, D.244, D.246 5 PLIP interactions: 5 interactions with chain E Metal complexes: E:D.169, E:H.171, E:D.244, E:D.246, E:D.246 MN.11: 4 residues within 4Å: Chain F: D.169, H.171, D.244, D.246 5 PLIP interactions: 5 interactions with chain F Metal complexes: F:D.169, F:H.171, F:D.244, F:D.246, F:D.246

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: R.58, P.60, Y.289, Y.296, N.300, V.301, G.302, A.305 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.289, A:G.302 GOL.4: 8 residues within 4Å: Chain B: R.58, P.60, Y.289, Y.296, N.300, V.301, G.302, A.305 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Y.289, B:G.302 GOL.6: 8 residues within 4Å: Chain C: R.58, P.60, Y.289, Y.296, N.300, V.301, G.302, A.305 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:Y.289, C:G.302 GOL.8: 6 residues within 4Å: Chain D: P.60, F.64, Y.289, N.300, V.301, G.302 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:G.302 GOL.10: 6 residues within 4Å: Chain E: P.60, F.64, Y.289, N.300, V.301, G.302 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:G.302 GOL.12: 6 residues within 4Å: Chain F: P.60, F.64, Y.289, N.300, V.301, G.302 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:G.302

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hai, Y. et al., Crystal Structure of an Arginase-like Protein from Trypanosoma brucei That Evolved without a Binuclear Manganese Cluster. Biochemistry (2015)

Release Date

2014-12-31

Peptides

Arginase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
B

E
B

F
B

Arginase