SMTL ID : 4rih.1

Chimeric Glycosyltransferase LanGT2S8Ac, carbasugar substrate complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.22 Å

Oligo State

homo-dimer

Ligands

2 x 3R2: 2'-deoxy-5'-O-[(R)-{[(R)-{[(1S,3R,4R,5S)-3,4-dihydroxy-5-methylcyclohexyl]oxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]-3,4-dihydrothymidine(Non-covalent)

3R2.1: 24 residues within 4Å: Chain A: A.12, T.13, F.15, W.136, D.137, N.195, T.216, G.218, S.219, R.220, A.247, T.248, G.266, W.267, V.268, P.269, L.270, H.283, A.284, G.285, G.286, V.287, T.288, F.308 26 PLIP interactions: 26 interactions with chain A Hydrophobic interactions: A:A.12, A:T.13, A:W.136, A:L.270, A:V.287 Hydrogen bonds: A:D.137, A:S.219, A:S.219, A:R.220, A:V.268, A:V.268, A:L.270, A:A.284, A:G.286, A:V.287, A:T.288, A:T.288, A:T.288 Water bridges: A:S.217, A:G.218, A:T.291, A:T.291 Salt bridges: A:R.220, A:H.283, A:H.283 pi-Stacking: A:W.267 3R2.2: 24 residues within 4Å: Chain B: A.12, T.13, F.15, W.136, D.137, N.195, T.216, G.218, S.219, R.220, A.247, T.248, G.266, W.267, V.268, P.269, L.270, H.283, A.284, G.285, G.286, V.287, T.288, F.308 24 PLIP interactions: 24 interactions with chain B Hydrophobic interactions: B:A.12, B:T.13, B:W.136, B:L.270, B:V.287 Hydrogen bonds: B:D.137, B:S.219, B:S.219, B:R.220, B:V.268, B:V.268, B:L.270, B:A.284, B:G.286, B:V.287, B:T.288, B:T.288 Water bridges: B:S.217, B:T.291, B:F.308 Salt bridges: B:R.220, B:H.283, B:H.283 pi-Stacking: B:W.267

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 1 residues within 4Å: Chain B: D.150 3 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.150, H2O.10, H2O.11

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tam, H.K. et al., Structural Characterization of O- and C-Glycosylating Variants of the Landomycin Glycosyltransferase LanGT2. Angew.Chem.Int.Ed.Engl. (2015)

Release Date

2015-01-28

Peptides

Glycosyl transferase homolog,Glycosyl transferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glycosyl transferase homolog,Glycosyl transferase

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