SMTL ID : 4rj0.2 (1 other biounit)

The crystal structure of Y333N mutant pyridoxal-dependent decarboxylase from Sphaerobacter thermophilus dsm 20745

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-dimer

Ligands

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 4 residues within 4Å: Chain A: L.139, F.140, R.289, E.296 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.296, A:E.296

1 x PMP: 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE(Covalent)

PMP.2: 16 residues within 4Å: Chain A: T.354 Chain B: M.94, G.153, G.154, S.155, N.158, H.193, S.195, T.246, G.248, T.250, D.275, A.277, N.304, Q.306, K.307 14 PLIP interactions: 12 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:T.246, B:A.277 Hydrogen bonds: B:G.154, B:S.155, B:T.250, B:N.304, B:Q.306, A:T.354, A:T.354 Water bridges: B:G.153, B:S.155, B:S.155, B:L.156 pi-Stacking: B:H.193

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 7 residues within 4Å: Chain B: L.139, F.140, V.283, R.289, L.292, A.293, E.296 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:L.139

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, R. et al., The crystal structure of Y333N mutant pyridoxal-dependent decarboxylase from Sphaerobacter thermophilus dsm 20745. To be Published

Release Date

2014-11-12

Peptides

Pyridoxal-dependent decarboxylase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Pyridoxal-dependent decarboxylase

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