SMTL ID : 4rkb.1

Crystal structure of Staphylococcal nuclease variant Delta+PHS V66T/V99T at cryogenic temperature

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.88 Å

Oligo State

monomer

Ligands

1 x THP: THYMIDINE-3',5'-DIPHOSPHATE(Non-covalent)

THP.1: 11 residues within 4Å: Chain A: R.35, L.37, D.40, D.77, K.78, Y.79, R.81, L.83, Y.107, Y.109 Ligands: CA.2 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:R.35, A:L.83, A:Y.107, A:Y.107 Hydrogen bonds: A:R.81 Water bridges: A:D.21, A:R.35, A:Y.107 Salt bridges: A:R.35, A:K.78, A:R.81

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 6 residues within 4Å: Chain A: D.21, R.35, D.40, T.41, E.43 Ligands: THP.1 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.21, A:D.40, A:T.41, H2O.1, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Caro, J.A. et al., Cavities in proteins. to be published

Release Date

2014-11-26

Peptides

Thermonuclease: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Thermonuclease