SMTL ID : 4rn7.1

The crystal structure of N-acetylmuramoyl-L-alanine amidase from Clostridium difficile 630

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.72 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain A: H.12, E.28, H.82 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.12, A:E.28, A:H.82

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: Y.4, Q.46, K.47, D.48, I.49, L.179, L.182 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.48

2 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.3: 8 residues within 4Å: Chain A: R.100, K.102, A.103, T.104, D.105, R.138, S.140, N.141 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.104, A:T.104, A:D.105 Salt bridges: A:R.100 EPE.4: 3 residues within 4Å: Chain A: E.86, A.92, R.127 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.86, A:E.86, A:R.127, A:R.127 Salt bridges: A:R.127

2 x FMT: FORMIC ACID(Non-functional Binders)

FMT.5: 1 residues within 4Å: Chain A: A.85 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.85 FMT.6: 3 residues within 4Å: Chain A: T.5, Q.50, S.73 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.50, A:S.73

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, K. et al., The crystal structure of N-acetylmuramoyl-L-alanine amidase from Clostridium difficile 630. To be Published

Release Date

2014-11-05

Peptides

N-acetylmuramoyl-L-alanine amidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

N-acetylmuramoyl-L-alanine amidase