SMTL ID : 4rnw.1 (1 other biounit)

Truncated version of the G303 Circular Permutation of Old Yellow Enzyme

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.1: 20 residues within 4Å: Chain A: A.19, G.20, N.21, Y.42, G.43, R.44, I.47, F.70, Y.71, P.129, P.130, L.131, T.132, G.167, Q.209, H.286, N.289, R.338 Ligands: EPE.2, EDO.3 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:R.44, A:I.47, A:F.70, A:Y.71, A:L.131 Hydrogen bonds: A:N.21, A:G.43, A:R.44, A:P.130, A:T.132, A:G.167, A:Q.209, A:Q.209, A:N.289, A:R.338, A:R.338 Water bridges: A:F.22, A:F.22, A:F.22, A:F.22, A:R.44, A:F.45 Salt bridges: A:R.44

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.2: 12 residues within 4Å: Chain A: Y.71, T.132, Y.177, W.211, F.218, H.286, N.289, Y.291, F.345 Ligands: FMN.1, EDO.3, EDO.9 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.289

9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 4 residues within 4Å: Chain A: N.289, F.345 Ligands: FMN.1, EPE.2 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.44, A:N.289 EDO.4: 4 residues within 4Å: Chain A: H.76, G.77, D.80, Y.81 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.76, A:G.77, A:D.80 EDO.5: 3 residues within 4Å: Chain A: K.369, K.372, A.373 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.369 EDO.6: 7 residues within 4Å: Chain A: M.134, Y.177, D.178, N.179, F.218, N.221 Ligands: EDO.9 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.178, A:N.179, A:N.179, A:N.221 EDO.7: 6 residues within 4Å: Chain A: S.233, D.234, N.235, S.255, T.303, R.304 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.234, A:S.255, A:S.255 Water bridges: A:T.303 EDO.8: 5 residues within 4Å: Chain A: F.237, E.243, A.246, P.252, Q.253 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.243, A:K.247, A:Q.253 Water bridges: A:Q.253 EDO.9: 3 residues within 4Å: Chain A: F.218 Ligands: EPE.2, EDO.6 No protein-ligand interaction detected (PLIP) EDO.10: 3 residues within 4Å: Chain A: P.114, I.115, E.121 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:P.114, A:E.121 Water bridges: A:I.115, A:E.121 EDO.11: 2 residues within 4Å: Chain A: E.313, R.317 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.317, A:R.317 Water bridges: A:N.314

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Daugherty, A.B. et al., STRUCTURAL AND FUNCTIONAL CONSEQUENCES OF CIRCULAR PERMUTATION ON THE ACTIVE SITE OF OLD YELLOW ENZYME. ACS Catal (2015)

Release Date

2015-01-14

Peptides

NADPH dehydrogenase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

NADPH dehydrogenase 1

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