SMTL ID : 4rnx.2 (1 other biounit)

K154 Circular Permutation of Old Yellow Enzyme

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.25 Å

Oligo State

monomer

Ligands

1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.1: 17 residues within 4Å: Chain A: H.40, N.43, R.92, P.144, G.173, N.174, Y.195, G.196, R.197, F.223, Y.224, P.282, P.283, L.284, T.285, G.320, Q.362 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:P.144, A:R.197, A:F.223, A:Y.224, A:L.284 Hydrogen bonds: A:N.43, A:R.92, A:R.92, A:N.174, A:G.196, A:R.197, A:P.283, A:T.285, A:G.320, A:Q.362, A:Q.362 Water bridges: A:G.173, A:G.173, A:R.197, A:R.197, A:F.198, A:Y.224 Salt bridges: A:R.197

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: D.159, Y.162, R.171 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.171 Water bridges: A:E.185 EDO.3: 4 residues within 4Å: Chain A: H.229, G.230, D.233, Y.234 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.233

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Daugherty, A.B. et al., STRUCTURAL AND FUNCTIONAL CONSEQUENCES OF CIRCULAR PERMUTATION ON THE ACTIVE SITE OF OLD YELLOW ENZYME. ACS Catal (2015)

Release Date

2015-01-14

Peptides

NADPH dehydrogenase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

NADPH dehydrogenase 1

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