- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ZN: ZINC ION(Non-covalent)
- 9 x SO4: SULFATE ION(Non-functional Binders)
SO4.2: 9 residues within 4Å:- Chain A: Q.64, D.65, F.86, R.88, D.144, R.309
- Chain B: H.210, P.211, V.212
6 PLIP interactions:1 interactions with chain B, 5 interactions with chain A- Hydrogen bonds: B:V.212, A:Q.64, A:D.144
- Water bridges: A:T.155
- Salt bridges: A:R.88, A:R.309
SO4.3: 5 residues within 4Å:- Chain A: Q.167, Y.168, Y.169, D.180, S.181
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Q.167, A:Y.169, A:S.181
SO4.4: 5 residues within 4Å:- Chain A: N.42, V.43, T.44, F.151, G.152
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:N.42, A:T.44, A:G.152
- Water bridges: A:T.44
SO4.5: 2 residues within 4Å:- Chain A: H.350, L.360
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:H.350
SO4.11: 8 residues within 4Å:- Chain A: G.207, R.208, F.209, H.210
- Chain B: G.207, R.208, F.209, H.210
5 PLIP interactions:3 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:F.209, A:H.210, B:F.209
- Salt bridges: A:H.210, B:H.210
SO4.12: 9 residues within 4Å:- Chain A: H.210, P.211, V.212
- Chain B: Q.64, D.65, F.86, R.88, D.144, R.309
4 PLIP interactions:3 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:Q.64, A:V.212
- Salt bridges: B:R.88, B:R.309
SO4.13: 5 residues within 4Å:- Chain B: N.42, V.43, T.44, F.151, G.152
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:T.44, B:G.152
- Water bridges: B:T.44, B:T.44
SO4.14: 2 residues within 4Å:- Chain B: H.350, L.360
1 PLIP interactions:1 interactions with chain B- Salt bridges: B:H.350
SO4.15: 5 residues within 4Å:- Chain B: Y.168, Y.169, D.180, S.181, K.182
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:Y.169, B:D.180, B:S.181, B:S.181, B:K.182
- Salt bridges: B:K.340
- 5 x GOL: GLYCEROL(Non-functional Binders)
GOL.6: 6 residues within 4Å:- Chain A: S.205, Y.206, R.216
- Chain B: R.208, K.214
- Ligands: GOL.9
5 PLIP interactions:2 interactions with chain B, 3 interactions with chain A- Hydrogen bonds: B:R.208, B:R.208, A:Y.206, A:R.216, A:R.216
GOL.7: 5 residues within 4Å:- Chain A: T.10, L.11, L.12, K.246, A.247
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:T.10, A:L.11, A:L.12, A:A.247
GOL.8: 7 residues within 4Å:- Chain A: S.63, Q.64, D.65, Y.206, R.309, P.310, I.311
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:S.63, A:Q.64, A:Y.206, A:R.309
- Water bridges: A:D.65
GOL.9: 5 residues within 4Å:- Chain A: N.175, F.204, N.312
- Chain B: K.214
- Ligands: GOL.6
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:N.175, A:N.312, B:K.214
GOL.16: 3 residues within 4Å:- Chain A: K.214
- Chain B: Y.206, N.312
4 PLIP interactions:3 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:N.312, A:K.214
- Water bridges: B:Y.206, B:G.315
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- An, D.R. et al., Structure of Csd3 from Helicobacter pylori, a cell shape-determining metallopeptidase. Acta Crystallogr.,Sect.D (2015)
- Release Date
- 2015-03-11
- Peptides
- Conserved hypothetical secreted protein: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ZN: ZINC ION(Non-covalent)
- 9 x SO4: SULFATE ION(Non-functional Binders)
- 5 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- An, D.R. et al., Structure of Csd3 from Helicobacter pylori, a cell shape-determining metallopeptidase. Acta Crystallogr.,Sect.D (2015)
- Release Date
- 2015-03-11
- Peptides
- Conserved hypothetical secreted protein: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B