SMTL ID : 4rta.1

Cystal structure of the Dpy30 for MLL/SET1 COMPASS H3K4 trimethylation

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.12 Å

Oligo State

homo-tetramer

Ligands

6 x FMT: FORMIC ACID(Non-functional Binders)

FMT.1: 5 residues within 4Å: Chain A: N.79, P.80, I.81, E.82 Chain B: K.92 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:I.81, A:E.82 Water bridges: A:E.82 FMT.2: 5 residues within 4Å: Chain A: E.96, D.97, N.99 Chain B: P.80 Ligands: FMT.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.97, A:N.99 FMT.3: 7 residues within 4Å: Chain A: K.92, E.96 Chain B: N.79, P.80, I.81, E.82 Ligands: FMT.2 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:I.81, B:E.82, A:K.92 FMT.4: 5 residues within 4Å: Chain C: N.79, P.80, I.81, E.82 Chain D: K.92 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:I.81, C:E.82 Water bridges: C:E.82 FMT.5: 5 residues within 4Å: Chain C: E.96, D.97, N.99 Chain D: P.80 Ligands: FMT.6 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:D.97, C:N.99 FMT.6: 7 residues within 4Å: Chain C: K.92, E.96 Chain D: N.79, P.80, I.81, E.82 Ligands: FMT.5 3 PLIP interactions: 2 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:I.81, D:E.82, C:K.92

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, H. et al., Structural implications of Dpy30 oligomerization for MLL/SET1 COMPASS H3K4 trimethylation. Protein Cell (2015)

Release Date

2015-10-07

Peptides

Protein dpy-30 homolog: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Protein dpy-30 homolog