SMTL ID : 4rvb.1

Crystal Structure Analysis of the Human Leukotriene A4 Hydrolase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.93 Å

Oligo State

monomer

Ligands

1 x YB: YTTERBIUM (III) ION(Non-covalent)

YB.1: 2 residues within 4Å: Chain A: D.502 Ligands: ACT.3 4 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions, 1 Ligand-Ligand interactions Metal complexes: A:D.502, A:D.502, H2O.1, ACT.3

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain A: H.316, H.320, E.339, Y.404 Ligands: ACT.4 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:H.320, A:E.339, A:E.339, ACT.4

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 3 residues within 4Å: Chain A: K.500, D.502 Ligands: YB.1 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:K.500 ACT.4: 9 residues within 4Å: Chain A: G.290, M.291, E.292, H.316, E.317, H.320, E.339, Y.404 Ligands: ZN.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.290 Salt bridges: A:H.316, A:H.320

3 x IMD: IMIDAZOLE(Non-covalent)

IMD.5: 7 residues within 4Å: Chain A: G.365, G.368, E.369, N.372, E.522, A.525, Q.529 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.369, A:N.372, A:E.522 IMD.6: 5 residues within 4Å: Chain A: W.332, F.335, V.388, A.398, P.403 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.332 IMD.7: 1 residues within 4Å: Chain A: P.217 1 PLIP interactions: 1 interactions with chain A pi-Stacking: A:Y.437

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.8: 2 residues within 4Å: Chain A: D.443, D.447 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.447 Water bridges: A:D.443 GOL.9: 8 residues within 4Å: Chain A: F.50, R.53, W.138, L.139, T.140, P.141, P.150, Y.151 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.53, A:R.53, A:Y.151

2 x ACY: ACETIC ACID(Non-functional Binders)

ACY.10: 8 residues within 4Å: Chain A: S.309, L.310, S.517, H.518, N.521, N.552, E.554, I.555 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.309, A:N.552 Water bridges: A:N.521 Salt bridges: A:H.518 ACY.11: 3 residues within 4Å: Chain A: S.172, K.438, S.439 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.439 Water bridges: A:K.174

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ouyang, P. et al., Crystal Structure Analysis of the Human Leukotriene A4 Hydrolase. To be Published

Release Date

2015-12-02

Peptides

Leukotriene A-4 hydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Leukotriene A-4 hydrolase

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