SMTL ID : 4rx7.1

SYK Catalytic Domain Complexed with a Potent Triazine Inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x FMT: FORMIC ACID(Non-functional Binders)

FMT.1: 2 residues within 4Å: Chain A: S.198, K.200 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.198 Water bridges: A:K.200

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: F.30, K.50, D.142, R.146, N.147, D.160 Ligands: 3YV.3 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.50, A:D.142, A:R.146, A:N.147, A:N.147 Water bridges: A:K.50

1 x 3YV: 3-{[(1R,2S)-2-aminocyclohexyl]amino}-5-{[3-(2H-1,2,3-triazol-2-yl)phenyl]amino}-1,2,4-triazine-6-carboxamide(Non-covalent)

3YV.3: 20 residues within 4Å: Chain A: L.25, G.26, S.27, V.33, A.48, K.50, V.81, M.96, E.97, M.98, A.99, G.102, P.103, K.106, R.146, N.147, L.149, S.159, D.160 Ligands: GOL.2 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.25, A:V.33, A:P.103 Hydrogen bonds: A:E.97, A:A.99, A:R.146, A:S.159, A:D.160 Water bridges: A:D.160, A:D.160

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Thoma, G. et al., Discovery and profiling of a selective and efficacious syk inhibitor. J.Med.Chem. (2015)

Release Date

2015-03-18

Peptides

Tyrosine-protein kinase SYK: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Tyrosine-protein kinase SYK

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