- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 8 x DUT: DEOXYURIDINE-5'-TRIPHOSPHATE(Non-covalent)
DUT.2: 13 residues within 4Å:- Chain A: Q.62, L.63, R.77, H.128, D.222, D.224, K.225, Y.228, D.232, R.279, H.283, Y.287, Q.288
17 PLIP interactions:17 interactions with chain A- Hydrophobic interactions: A:L.63, A:Y.287
- Hydrogen bonds: A:Q.62, A:R.77, A:K.225, A:Y.228, A:D.232, A:Q.288
- Water bridges: A:R.77, A:Y.287, A:Y.287
- Salt bridges: A:H.128, A:K.225, A:K.225, A:R.279, A:H.283
- pi-Stacking: A:H.128
DUT.3: 18 residues within 4Å:- Chain A: V.69, F.70, R.285, H.289, K.290, V.291
- Chain B: V.30, I.31, N.32, H.38
- Chain C: R.246, F.250, R.265, K.267, N.271, K.436
- Ligands: GTP.1, MG.6
20 PLIP interactions:9 interactions with chain C, 9 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: C:R.246, C:N.271, A:V.69, B:N.32, B:N.32
- Salt bridges: C:R.246, C:R.265, C:K.267, C:K.267, C:K.267, C:K.436, A:H.289, A:H.289, A:K.290, A:K.290, A:K.290
- pi-Cation interactions: C:R.246
- Hydrophobic interactions: A:V.69, A:F.70
- Water bridges: A:K.290
DUT.7: 15 residues within 4Å:- Chain B: Q.62, L.63, R.77, H.128, S.215, G.220, D.222, D.224, K.225, Y.228, D.232, R.279, H.283, Y.287, Q.288
18 PLIP interactions:18 interactions with chain B- Hydrophobic interactions: B:L.63, B:Y.287
- Hydrogen bonds: B:Q.62, B:R.77, B:S.215, B:Y.228, B:D.232, B:Q.288
- Water bridges: B:R.77, B:Y.287, B:Y.287
- Salt bridges: B:H.128, B:K.225, B:K.225, B:R.279, B:R.279, B:H.283
- pi-Stacking: B:H.128
DUT.8: 18 residues within 4Å:- Chain A: V.30, I.31, N.32, H.38
- Chain B: V.69, F.70, R.285, H.289, K.290, V.291
- Chain D: R.246, F.250, R.265, K.267, N.271, K.436
- Ligands: GTP.4, MG.5
22 PLIP interactions:8 interactions with chain B, 12 interactions with chain D, 2 interactions with chain A- Hydrophobic interactions: B:V.69, B:F.70
- Hydrogen bonds: B:V.69, D:R.246, D:N.271, A:N.32, A:N.32
- Salt bridges: B:H.289, B:H.289, B:K.290, B:K.290, B:K.290, D:R.246, D:R.265, D:K.267, D:K.267, D:K.267, D:K.436
- Water bridges: D:R.246, D:K.267, D:K.267
- pi-Cation interactions: D:R.246
DUT.10: 13 residues within 4Å:- Chain C: Q.62, L.63, R.77, H.128, D.222, D.224, K.225, Y.228, D.232, R.279, H.283, Y.287, Q.288
17 PLIP interactions:17 interactions with chain C- Hydrophobic interactions: C:L.63, C:Y.287
- Hydrogen bonds: C:Q.62, C:R.77, C:D.224, C:K.225, C:D.232, C:Q.288
- Water bridges: C:R.77, C:Y.287, C:Y.287
- Salt bridges: C:H.128, C:K.225, C:K.225, C:R.279, C:H.283
- pi-Stacking: C:H.128
DUT.11: 18 residues within 4Å:- Chain A: R.246, F.250, R.265, K.267, N.271, K.436
- Chain C: V.69, F.70, R.285, H.289, K.290, V.291
- Chain D: V.30, I.31, N.32, H.38
- Ligands: GTP.9, MG.14
20 PLIP interactions:9 interactions with chain C, 9 interactions with chain A, 2 interactions with chain D- Hydrophobic interactions: C:V.69, C:F.70
- Hydrogen bonds: C:V.69, A:R.246, A:N.271, D:N.32, D:N.32
- Water bridges: C:K.290
- Salt bridges: C:H.289, C:H.289, C:K.290, C:K.290, C:K.290, A:R.246, A:R.265, A:K.267, A:K.267, A:K.267, A:K.436
- pi-Cation interactions: A:R.246
DUT.15: 15 residues within 4Å:- Chain D: Q.62, L.63, R.77, H.128, S.215, G.220, D.222, D.224, K.225, Y.228, D.232, R.279, H.283, Y.287, Q.288
18 PLIP interactions:18 interactions with chain D- Hydrophobic interactions: D:L.63, D:Y.287
- Hydrogen bonds: D:Q.62, D:R.77, D:S.215, D:D.224, D:D.232, D:Q.288
- Water bridges: D:R.77, D:Y.287, D:Y.287
- Salt bridges: D:H.128, D:K.225, D:K.225, D:R.279, D:R.279, D:H.283
- pi-Stacking: D:H.128
DUT.16: 18 residues within 4Å:- Chain B: R.246, F.250, R.265, K.267, N.271, K.436
- Chain C: V.30, I.31, N.32, H.38
- Chain D: V.69, F.70, R.285, H.289, K.290, V.291
- Ligands: GTP.12, MG.13
22 PLIP interactions:12 interactions with chain B, 8 interactions with chain D, 2 interactions with chain C- Hydrogen bonds: B:R.246, B:N.271, D:V.69, C:N.32, C:N.32
- Water bridges: B:R.246, B:K.267, B:K.267
- Salt bridges: B:R.246, B:R.265, B:K.267, B:K.267, B:K.267, B:K.436, D:H.289, D:H.289, D:K.290, D:K.290, D:K.290
- pi-Cation interactions: B:R.246
- Hydrophobic interactions: D:V.69, D:F.70
- 4 x MG: MAGNESIUM ION(Non-covalent)
MG.5: 4 residues within 4Å:- Chain A: K.29
- Chain D: K.436
- Ligands: GTP.4, DUT.8
No protein-ligand interaction detected (PLIP)MG.6: 4 residues within 4Å:- Chain B: K.29
- Chain C: K.436
- Ligands: GTP.1, DUT.3
No protein-ligand interaction detected (PLIP)MG.13: 4 residues within 4Å:- Chain B: K.436
- Chain C: K.29
- Ligands: GTP.12, DUT.16
No protein-ligand interaction detected (PLIP)MG.14: 4 residues within 4Å:- Chain A: K.436
- Chain D: K.29
- Ligands: GTP.9, DUT.11
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhu, C.F. et al., The mechanism of substrate-controlled allosteric regulation of SAMHD1 activated by GTP. Acta Crystallogr.,Sect.D (2015)
- Release Date
- 2015-03-11
- Peptides
- Deoxynucleoside triphosphate triphosphohydrolase SAMHD1: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 8 x DUT: DEOXYURIDINE-5'-TRIPHOSPHATE(Non-covalent)
- 4 x MG: MAGNESIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhu, C.F. et al., The mechanism of substrate-controlled allosteric regulation of SAMHD1 activated by GTP. Acta Crystallogr.,Sect.D (2015)
- Release Date
- 2015-03-11
- Peptides
- Deoxynucleoside triphosphate triphosphohydrolase SAMHD1: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B