SMTL ID : 4ry0.1

Crystal structure of ribose transporter solute binding protein RHE_PF00037 from Rhizobium etli CFN 42, TARGET EFI-511357, in complex with D-ribose

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

1 x RIP: beta-D-ribopyranose(Non-covalent)

RIP.1: 11 residues within 4Å: Chain A: N.15, F.18, D.91, R.92, D.138, N.140, R.144, W.168, N.194, D.219, Q.239 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:N.15, A:D.91, A:D.91, A:N.140, A:R.144, A:R.144, A:N.194, A:D.219, A:Q.239 Water bridges: A:D.219 Salt bridges: A:R.92, A:R.144

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 5 residues within 4Å: Chain A: G.69, A.70, D.71, A.72, S.137 Ligand excluded by PLIP

1 x CA: CALCIUM ION(Non-covalent)

CA.3: 3 residues within 4Å: Chain A: D.150, D.153, D.154 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.150, A:D.153, A:D.154, H2O.9, H2O.9

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Patskovsky, Y. et al., Crystal Structure of Ribose Transporter Solute Binding Protein from Rhizobium Etly, Target Efi-511357. To be Published

Release Date

2014-12-24

Peptides

Probable ribose ABC transporter, substrate-binding protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Probable ribose ABC transporter, substrate-binding protein