SMTL ID : 4ry5.1 (1 other biounit)

C-terminal mutant (W550N) of HCV/J4 RNA polymerase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.71 Å

Oligo State

monomer

Ligands

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: D.220, D.318, D.319 Ligands: UTP.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.220, A:D.318, A:D.319 MN.2: 4 residues within 4Å: Chain A: D.220, T.221, D.318 Ligands: UTP.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.220, A:T.221, A:D.318

1 x UTP: URIDINE 5'-TRIPHOSPHATE(Non-covalent)

UTP.3: 14 residues within 4Å: Chain A: K.141, R.158, I.160, D.220, C.223, D.225, S.282, T.287, N.291, D.318, D.319, S.556 Ligands: MN.1, MN.2 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:I.160 Hydrogen bonds: A:K.141, A:R.158, A:R.158, A:C.223, A:N.291 Water bridges: A:R.48, A:D.225, A:D.225, A:D.318 Salt bridges: A:R.158 pi-Cation interactions: A:R.158

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cherry, A.L. et al., Hydrophobic and Charged Residues in the C-Terminal Arm of Hepatitis C Virus RNA-Dependent RNA Polymerase Regulate Initiation and Elongation. J.Virol. (2015)

Release Date

2014-12-31

Peptides

HCV J4 RNA polymerase (NS5B): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

HCV J4 RNA polymerase (NS5B)

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