SMTL ID : 4ryt.1

Crystal Structure of F222 form of E112A Mutant of Stationary Phase Survival Protein (SurE) from Salmonella typhimurium

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.09 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: D.22, D.23, S.53, N.106 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.22, A:D.23, A:S.53, H2O.1, H2O.5 MG.8: 4 residues within 4Å: Chain B: D.22, D.23, S.53, N.106 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.22, B:D.23, B:S.53, H2O.12, H2O.16

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 8 residues within 4Å: Chain A: G.54, P.109, N.110, D.114, Y.117, S.118 Chain B: L.61 Ligands: PO4.3 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:G.54, A:N.110 Water bridges: A:N.106, A:N.106, A:P.109, A:Y.117, A:G.119, A:G.119 PO4.3: 4 residues within 4Å: Chain A: D.114, Y.117, P.216 Ligands: PO4.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.114 PO4.9: 8 residues within 4Å: Chain A: L.61 Chain B: G.54, P.109, N.110, D.114, Y.117, S.118 Ligands: PO4.10 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:G.54, B:N.110 Water bridges: B:N.106, B:N.106, B:P.109, B:Y.117, B:G.119, B:G.119 PO4.10: 4 residues within 4Å: Chain B: D.114, Y.117, P.216 Ligands: PO4.9 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.114

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 5 residues within 4Å: Chain A: L.111, N.140, K.219, F.228, D.232 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.219, A:F.228 Water bridges: A:N.140, A:N.140, A:R.193 EDO.5: 3 residues within 4Å: Chain A: S.255, D.259 Chain B: I.185 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Water bridges: B:I.185, A:G.264 EDO.6: 5 residues within 4Å: Chain A: Y.87, V.90, N.91, A.126 Chain B: A.196 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.91, A:N.91 EDO.7: 2 residues within 4Å: Chain A: Y.220, D.221 1 PLIP interactions: 1 interactions with chain A Water bridges: A:Y.220 EDO.11: 5 residues within 4Å: Chain B: L.111, N.140, K.219, F.228, D.232 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:K.219, B:F.228 Water bridges: B:N.140, B:N.140, B:R.193 EDO.12: 3 residues within 4Å: Chain A: I.185 Chain B: S.255, D.259 2 PLIP interactions: 2 interactions with chain A Water bridges: A:I.185, A:I.185 EDO.13: 5 residues within 4Å: Chain A: A.196 Chain B: Y.87, V.90, N.91, A.126 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.91, B:N.91 EDO.14: 2 residues within 4Å: Chain B: Y.220, D.221 1 PLIP interactions: 1 interactions with chain B Water bridges: B:Y.220

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mathiharan, Y.K. et al., Insights into stabilizing interactions in the distorted domain-swapped dimer of Salmonella typhimurium survival protein. Acta Crystallogr. D Biol. Crystallogr. (2015)

Release Date

2015-09-09

Peptides

5'/3'-nucleotidase SurE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

5'/3'-nucleotidase SurE

Related Entries With Identical Sequence