SMTL ID : 4rz7.1

Crystal Structure of PVX_084705 with bound PCI32765

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

homo-dimer

Ligands

2 x 1E8: 1-{(3R)-3-[4-amino-3-(4-phenoxyphenyl)-1H-pyrazolo[3,4-d]pyrimidin-1-yl]piperidin-1-yl}prop-2-en-1-one(Non-covalent)

1E8.1: 12 residues within 4Å: Chain A: I.541, A.562, K.564, T.587, I.596, F.610, T.612, E.613, L.614, V.615, L.665, I.675 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.610, A:T.612, A:L.665 Hydrogen bonds: A:I.541, A:T.612, A:E.613, A:V.615 1E8.68: 12 residues within 4Å: Chain B: I.541, A.562, K.564, T.587, I.596, F.610, T.612, E.613, L.614, V.615, L.665, I.675 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:F.610, B:T.612, B:L.665 Hydrogen bonds: B:I.541, B:T.612, B:E.613, B:V.615

132 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.2: 2 residues within 4Å: Chain A: D.387, G.390 Ligand excluded by PLIP UNX.3: 3 residues within 4Å: Chain A: R.291, Q.292, F.293 Ligand excluded by PLIP UNX.4: 2 residues within 4Å: Chain A: Y.327, D.355 Ligand excluded by PLIP UNX.5: 1 residues within 4Å: Chain A: H.315 Ligand excluded by PLIP UNX.6: 1 residues within 4Å: Chain A: V.322 Ligand excluded by PLIP UNX.7: 2 residues within 4Å: Chain A: Y.203 Ligands: UNX.10 Ligand excluded by PLIP UNX.8: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP UNX.9: 1 residues within 4Å: Chain A: Y.754 Ligand excluded by PLIP UNX.10: 2 residues within 4Å: Chain A: Y.203 Ligands: UNX.7 Ligand excluded by PLIP UNX.11: 1 residues within 4Å: Chain A: E.382 Ligand excluded by PLIP UNX.12: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP UNX.13: 2 residues within 4Å: Chain A: N.402, K.471 Ligand excluded by PLIP UNX.14: 1 residues within 4Å: Chain A: S.245 Ligand excluded by PLIP UNX.15: 3 residues within 4Å: Chain A: A.588, E.589, R.597 Ligand excluded by PLIP UNX.16: 1 residues within 4Å: Chain A: R.349 Ligand excluded by PLIP UNX.17: 1 residues within 4Å: Chain A: D.483 Ligand excluded by PLIP UNX.18: 3 residues within 4Å: Chain A: F.795, N.796 Ligands: UNX.55 Ligand excluded by PLIP UNX.19: 2 residues within 4Å: Chain A: H.315, K.321 Ligand excluded by PLIP UNX.20: 2 residues within 4Å: Chain A: R.478, T.487 Ligand excluded by PLIP UNX.21: 2 residues within 4Å: Chain A: E.647, K.787 Ligand excluded by PLIP UNX.22: 2 residues within 4Å: Chain A: I.266, G.774 Ligand excluded by PLIP UNX.23: 2 residues within 4Å: Chain A: F.276 Ligands: UNX.24 Ligand excluded by PLIP UNX.24: 3 residues within 4Å: Chain A: L.331, E.332 Ligands: UNX.23 Ligand excluded by PLIP UNX.25: 1 residues within 4Å: Chain A: S.505 Ligand excluded by PLIP UNX.26: 3 residues within 4Å: Chain A: M.173, T.175, N.278 Ligand excluded by PLIP UNX.27: 1 residues within 4Å: Chain A: E.806 Ligand excluded by PLIP UNX.28: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP UNX.29: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP UNX.30: 2 residues within 4Å: Chain A: Q.512, P.514 Ligand excluded by PLIP UNX.31: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP UNX.32: 1 residues within 4Å: Chain A: N.220 Ligand excluded by PLIP UNX.33: 1 residues within 4Å: Chain A: R.236 Ligand excluded by PLIP UNX.34: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP UNX.35: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP UNX.36: 1 residues within 4Å: Chain B: F.14 Ligand excluded by PLIP UNX.37: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP UNX.38: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP UNX.39: 1 residues within 4Å: Chain A: R.742 Ligand excluded by PLIP UNX.40: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP UNX.41: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP UNX.42: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP UNX.43: 2 residues within 4Å: Chain A: E.442, G.443 Ligand excluded by PLIP UNX.44: 1 residues within 4Å: Chain A: G.443 Ligand excluded by PLIP UNX.45: 1 residues within 4Å: Chain A: E.435 Ligand excluded by PLIP UNX.46: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP UNX.47: 4 residues within 4Å: Chain A: P.514, Y.671, R.803, L.805 Ligand excluded by PLIP UNX.48: 3 residues within 4Å: Chain A: K.409, Y.411, D.591 Ligand excluded by PLIP UNX.49: 1 residues within 4Å: Chain A: L.481 Ligand excluded by PLIP UNX.50: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP UNX.51: 3 residues within 4Å: Chain A: G.269, N.270, V.273 Ligand excluded by PLIP UNX.52: 5 residues within 4Å: Chain A: G.446, S.447, R.448, Y.450, R.486 Ligand excluded by PLIP UNX.53: 3 residues within 4Å: Chain A: P.729, D.743, Q.748 Ligand excluded by PLIP UNX.54: 2 residues within 4Å: Chain A: C.769, R.770 Ligand excluded by PLIP UNX.55: 5 residues within 4Å: Chain A: F.795, N.796, W.797 Ligands: UNX.18, UNX.66 Ligand excluded by PLIP UNX.56: 2 residues within 4Å: Chain A: S.231, Y.232 Ligand excluded by PLIP UNX.57: 2 residues within 4Å: Chain A: P.752, D.753 Ligand excluded by PLIP UNX.58: 2 residues within 4Å: Chain A: D.473, Y.474 Ligand excluded by PLIP UNX.59: 3 residues within 4Å: Chain A: E.619, E.662 Chain B: R.7 Ligand excluded by PLIP UNX.60: 2 residues within 4Å: Chain A: L.423, E.426 Ligand excluded by PLIP UNX.61: 1 residues within 4Å: Chain A: V.307 Ligand excluded by PLIP UNX.62: 1 residues within 4Å: Chain A: R.349 Ligand excluded by PLIP UNX.63: 1 residues within 4Å: Chain A: Q.634 Ligand excluded by PLIP UNX.64: 2 residues within 4Å: Chain A: R.584, F.608 Ligand excluded by PLIP UNX.65: 3 residues within 4Å: Chain A: L.644, K.787, W.797 Ligand excluded by PLIP UNX.66: 3 residues within 4Å: Chain A: K.787, W.797 Ligands: UNX.55 Ligand excluded by PLIP UNX.67: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP UNX.69: 2 residues within 4Å: Chain B: D.387, G.390 Ligand excluded by PLIP UNX.70: 3 residues within 4Å: Chain B: R.291, Q.292, F.293 Ligand excluded by PLIP UNX.71: 2 residues within 4Å: Chain B: Y.327, D.355 Ligand excluded by PLIP UNX.72: 1 residues within 4Å: Chain B: H.315 Ligand excluded by PLIP UNX.73: 1 residues within 4Å: Chain B: V.322 Ligand excluded by PLIP UNX.74: 2 residues within 4Å: Chain B: Y.203 Ligands: UNX.77 Ligand excluded by PLIP UNX.75: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP UNX.76: 1 residues within 4Å: Chain B: Y.754 Ligand excluded by PLIP UNX.77: 2 residues within 4Å: Chain B: Y.203 Ligands: UNX.74 Ligand excluded by PLIP UNX.78: 1 residues within 4Å: Chain B: E.382 Ligand excluded by PLIP UNX.79: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP UNX.80: 2 residues within 4Å: Chain B: N.402, K.471 Ligand excluded by PLIP UNX.81: 1 residues within 4Å: Chain B: S.245 Ligand excluded by PLIP UNX.82: 3 residues within 4Å: Chain B: A.588, E.589, R.597 Ligand excluded by PLIP UNX.83: 1 residues within 4Å: Chain B: R.349 Ligand excluded by PLIP UNX.84: 1 residues within 4Å: Chain B: D.483 Ligand excluded by PLIP UNX.85: 3 residues within 4Å: Chain B: F.795, N.796 Ligands: UNX.122 Ligand excluded by PLIP UNX.86: 2 residues within 4Å: Chain B: H.315, K.321 Ligand excluded by PLIP UNX.87: 2 residues within 4Å: Chain B: R.478, T.487 Ligand excluded by PLIP UNX.88: 2 residues within 4Å: Chain B: E.647, K.787 Ligand excluded by PLIP UNX.89: 2 residues within 4Å: Chain B: I.266, G.774 Ligand excluded by PLIP UNX.90: 2 residues within 4Å: Chain B: F.276 Ligands: UNX.91 Ligand excluded by PLIP UNX.91: 3 residues within 4Å: Chain B: L.331, E.332 Ligands: UNX.90 Ligand excluded by PLIP UNX.92: 1 residues within 4Å: Chain B: S.505 Ligand excluded by PLIP UNX.93: 3 residues within 4Å: Chain B: M.173, T.175, N.278 Ligand excluded by PLIP UNX.94: 1 residues within 4Å: Chain B: E.806 Ligand excluded by PLIP UNX.95: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP UNX.96: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP UNX.97: 2 residues within 4Å: Chain B: Q.512, P.514 Ligand excluded by PLIP UNX.98: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP UNX.99: 1 residues within 4Å: Chain B: N.220 Ligand excluded by PLIP UNX.100: 1 residues within 4Å: Chain B: R.236 Ligand excluded by PLIP UNX.101: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP UNX.102: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP UNX.103: 1 residues within 4Å: Chain A: F.14 Ligand excluded by PLIP UNX.104: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP UNX.105: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP UNX.106: 1 residues within 4Å: Chain B: R.742 Ligand excluded by PLIP UNX.107: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP UNX.108: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP UNX.109: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP UNX.110: 2 residues within 4Å: Chain B: E.442, G.443 Ligand excluded by PLIP UNX.111: 1 residues within 4Å: Chain B: G.443 Ligand excluded by PLIP UNX.112: 1 residues within 4Å: Chain B: E.435 Ligand excluded by PLIP UNX.113: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP UNX.114: 4 residues within 4Å: Chain B: P.514, Y.671, R.803, L.805 Ligand excluded by PLIP UNX.115: 3 residues within 4Å: Chain B: K.409, Y.411, D.591 Ligand excluded by PLIP UNX.116: 1 residues within 4Å: Chain B: L.481 Ligand excluded by PLIP UNX.117: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP UNX.118: 3 residues within 4Å: Chain B: G.269, N.270, V.273 Ligand excluded by PLIP UNX.119: 5 residues within 4Å: Chain B: G.446, S.447, R.448, Y.450, R.486 Ligand excluded by PLIP UNX.120: 3 residues within 4Å: Chain B: P.729, D.743, Q.748 Ligand excluded by PLIP UNX.121: 2 residues within 4Å: Chain B: C.769, R.770 Ligand excluded by PLIP UNX.122: 5 residues within 4Å: Chain B: F.795, N.796, W.797 Ligands: UNX.85, UNX.133 Ligand excluded by PLIP UNX.123: 2 residues within 4Å: Chain B: S.231, Y.232 Ligand excluded by PLIP UNX.124: 2 residues within 4Å: Chain B: P.752, D.753 Ligand excluded by PLIP UNX.125: 2 residues within 4Å: Chain B: D.473, Y.474 Ligand excluded by PLIP UNX.126: 3 residues within 4Å: Chain A: R.7 Chain B: E.619, E.662 Ligand excluded by PLIP UNX.127: 2 residues within 4Å: Chain B: L.423, E.426 Ligand excluded by PLIP UNX.128: 1 residues within 4Å: Chain B: V.307 Ligand excluded by PLIP UNX.129: 1 residues within 4Å: Chain B: R.349 Ligand excluded by PLIP UNX.130: 1 residues within 4Å: Chain B: Q.634 Ligand excluded by PLIP UNX.131: 2 residues within 4Å: Chain B: R.584, F.608 Ligand excluded by PLIP UNX.132: 3 residues within 4Å: Chain B: L.644, K.787, W.797 Ligand excluded by PLIP UNX.133: 3 residues within 4Å: Chain B: K.787, W.797 Ligands: UNX.122 Ligand excluded by PLIP UNX.134: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jiang, D.Q. et al., Crystal Structure of PVX_084705 with bound PCI32765. To be Published

Release Date

2015-01-14

Peptides

cGMP-dependent protein kinase, putative: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

cGMP-dependent protein kinase, putative

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