SMTL ID : 4rzq.1

Structural Analysis of Substrate, Reaction Intermediate and Product Binding in Haemophilus influenzae Biotin Carboxylase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

homo-dimer

Ligands

2 x Y7Y: methyl (3aS,4S,6aR)-4-(5-methoxy-5-oxopentyl)-2-oxohexahydro-1H-thieno[3,4-d]imidazole-1-carboxylate(Non-covalent)

Y7Y.1: 14 residues within 4Å: Chain A: N.29, R.30, I.33, Y.102, G.103, F.104, K.258, E.296, R.312, Q.314, V.315, E.316, R.358, D.402 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:Y.102, A:Y.102, A:F.104 Hydrogen bonds: A:R.312, A:R.312, A:V.315, A:R.358 Water bridges: A:Y.102 Salt bridges: A:R.30 Y7Y.3: 14 residues within 4Å: Chain B: N.29, R.30, I.33, Y.102, G.103, F.104, K.258, E.296, R.312, Q.314, V.315, E.316, R.358, D.402 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:Y.102, B:Y.102, B:F.104 Hydrogen bonds: B:R.312, B:R.312, B:V.315, B:R.358 Water bridges: B:Y.102 Salt bridges: B:R.30

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.2: 10 residues within 4Å: Chain A: V.151, I.177, E.221, K.222, Y.223, L.224, H.256, L.298, E.308, I.457 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.221, A:L.224, A:H.256 Salt bridges: A:K.136, A:K.136 ADP.4: 10 residues within 4Å: Chain B: V.151, I.177, E.221, K.222, Y.223, L.224, H.256, L.298, E.308, I.457 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:E.221, B:L.224, B:H.256 Salt bridges: B:K.136, B:K.136

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Broussard, T.C. et al., Structural Analysis of Substrate, Reaction Intermediate, and Product Binding in Haemophilus influenzae Biotin Carboxylase. Biochemistry (2015)

Release Date

2015-06-10

Peptides

Biotin carboxylase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Biotin carboxylase

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