SMTL ID : 4s1o.4 (5 other biounits)

Structure of Mycobacterium tuberculosis NadD in complex with NADP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

homo-dimer

Ligands

2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 21 residues within 4Å: Chain A: M.10, G.11, G.12, T.13, F.14, H.18, H.21, T.85, Y.86, T.87, F.105, T.106, T.107, G.108, A.111, W.118, Q.119, V.133, L.165, S.168, S.169 24 PLIP interactions: 24 interactions with chain A Hydrogen bonds: A:G.11, A:G.11, A:T.13, A:T.13, A:T.13, A:T.87, A:T.87, A:G.108, A:Q.119, A:S.169, A:S.169 Water bridges: A:G.12, A:F.14, A:F.14, A:F.14, A:D.78, A:K.88, A:T.170, A:T.170 Salt bridges: A:H.18, A:H.21 pi-Stacking: A:H.21, A:W.118, A:W.118 NAP.3: 22 residues within 4Å: Chain B: M.10, G.11, G.12, T.13, F.14, H.18, H.21, S.42, T.85, Y.86, T.87, F.105, T.106, T.107, G.108, A.111, I.115, W.118, V.133, L.165, S.168, S.169 26 PLIP interactions: 26 interactions with chain B Hydrophobic interactions: B:I.115 Hydrogen bonds: B:G.11, B:G.11, B:T.13, B:T.13, B:T.87, B:T.87, B:T.107, B:G.108, B:W.118, B:S.169, B:S.169 Water bridges: B:G.12, B:T.13, B:D.78, B:K.88, B:A.109, B:A.109, B:D.110, B:T.170, B:T.170, B:R.173, B:R.173 Salt bridges: B:H.18, B:H.21 pi-Stacking: B:H.21

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 2 residues within 4Å: Chain A: S.73, V.74 Ligand excluded by PLIP CL.4: 2 residues within 4Å: Chain B: S.73, V.74 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Korotkov, K.V., Structure of Mycobacterium tuberculosis protein. To be Published

Release Date

2016-01-20

Peptides

Probable nicotinate-nucleotide adenylyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Probable nicotinate-nucleotide adenylyltransferase

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