SMTL ID : 4s3f.1

IspG in complex with Inhibitor 8 (compound 1077)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

2 x F3S: FE3-S4 CLUSTER(Non-covalent)

F3S.1: 10 residues within 4Å: Chain B: C.297, P.298, G.299, C.300, R.302, T.303, G.342, C.343, V.345 Ligands: 43W.2 3 PLIP interactions: 3 interactions with chain B, Metal complexes: B:C.297, B:C.300, B:C.343 F3S.3: 10 residues within 4Å: Chain A: C.297, P.298, G.299, C.300, R.302, T.303, G.342, C.343, V.345 Ligands: 43W.4 3 PLIP interactions: 3 interactions with chain A, Metal complexes: A:C.297, A:C.300, A:C.343

2 x 43W: but-3-yn-1-yl trihydrogen diphosphate(Non-covalent)

43W.2: 12 residues within 4Å: Chain A: M.29, R.56, D.87, R.110, R.141, N.145, K.204, T.231, E.232, R.260, S.262 Ligands: F3S.1 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:N.145, A:T.231, A:E.232, A:S.262 Water bridges: A:R.110, A:R.110, A:R.141, A:K.204, A:K.204, A:S.262 Salt bridges: A:R.56, A:R.56, A:R.110, A:R.141, A:K.204, A:K.204, A:R.260 43W.4: 12 residues within 4Å: Chain B: M.29, R.56, D.87, R.110, R.141, N.145, K.204, T.231, E.232, R.260, S.262 Ligands: F3S.3 16 PLIP interactions: 16 interactions with chain B Hydrogen bonds: B:N.145, B:E.232, B:S.262 Water bridges: B:R.110, B:R.110, B:R.141, B:K.204, B:K.204, B:S.262 Salt bridges: B:R.56, B:R.56, B:R.110, B:R.141, B:K.204, B:K.204, B:R.260

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Quitterer, F. et al., Atomic-Resolution Structures of Discrete Stages on the Reaction Coordinate of the [Fe4S4] Enzyme IspG (GcpE). J.Mol.Biol. (2015)

Release Date

2015-04-29

Peptides

4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase

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