SMTL ID : 4sbv.3 (4 other biounits)

The REFINEMENT OF SOUTHERN BEAN MOSAIC VIRUS IN RECIPROCAL SPACE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-18-mer

Ligands

18 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: D.138, D.141 Chain B: F.199, N.259, L.260 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Metal complexes: A:D.138, A:D.141, B:F.199, B:L.260 CA.2: 6 residues within 4Å: Chain B: D.138, D.141 Chain C: F.199, K.200, N.259, L.260 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain C Metal complexes: B:D.138, B:D.141, B:D.141, C:F.199, C:L.260 CA.3: 5 residues within 4Å: Chain A: F.199, N.259, L.260 Chain C: D.138, D.141 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain A Metal complexes: C:D.138, C:D.141, A:F.199, A:L.260 CA.4: 5 residues within 4Å: Chain D: D.138, D.141 Chain E: F.199, N.259, L.260 4 PLIP interactions: 2 interactions with chain E, 2 interactions with chain D Metal complexes: E:F.199, E:L.260, D:D.138, D:D.141 CA.5: 6 residues within 4Å: Chain E: D.138, D.141 Chain F: F.199, K.200, N.259, L.260 5 PLIP interactions: 3 interactions with chain E, 2 interactions with chain F Metal complexes: E:D.138, E:D.141, E:D.141, F:F.199, F:L.260 CA.6: 5 residues within 4Å: Chain D: F.199, N.259, L.260 Chain F: D.138, D.141 4 PLIP interactions: 2 interactions with chain D, 2 interactions with chain F Metal complexes: D:F.199, D:L.260, F:D.138, F:D.141 CA.7: 5 residues within 4Å: Chain G: D.138, D.141 Chain H: F.199, N.259, L.260 4 PLIP interactions: 2 interactions with chain H, 2 interactions with chain G Metal complexes: H:F.199, H:L.260, G:D.138, G:D.141 CA.8: 6 residues within 4Å: Chain H: D.138, D.141 Chain I: F.199, K.200, N.259, L.260 5 PLIP interactions: 2 interactions with chain I, 3 interactions with chain H Metal complexes: I:F.199, I:L.260, H:D.138, H:D.141, H:D.141 CA.9: 5 residues within 4Å: Chain G: F.199, N.259, L.260 Chain I: D.138, D.141 4 PLIP interactions: 2 interactions with chain G, 2 interactions with chain I Metal complexes: G:F.199, G:L.260, I:D.138, I:D.141 CA.10: 5 residues within 4Å: Chain J: D.138, D.141 Chain K: F.199, N.259, L.260 4 PLIP interactions: 2 interactions with chain J, 2 interactions with chain K Metal complexes: J:D.138, J:D.141, K:F.199, K:L.260 CA.11: 6 residues within 4Å: Chain K: D.138, D.141 Chain L: F.199, K.200, N.259, L.260 5 PLIP interactions: 2 interactions with chain L, 3 interactions with chain K Metal complexes: L:F.199, L:L.260, K:D.138, K:D.141, K:D.141 CA.12: 5 residues within 4Å: Chain J: F.199, N.259, L.260 Chain L: D.138, D.141 4 PLIP interactions: 2 interactions with chain L, 2 interactions with chain J Metal complexes: L:D.138, L:D.141, J:F.199, J:L.260 CA.13: 5 residues within 4Å: Chain M: D.138, D.141 Chain N: F.199, N.259, L.260 4 PLIP interactions: 2 interactions with chain M, 2 interactions with chain N Metal complexes: M:D.138, M:D.141, N:F.199, N:L.260 CA.14: 6 residues within 4Å: Chain N: D.138, D.141 Chain O: F.199, K.200, N.259, L.260 5 PLIP interactions: 3 interactions with chain N, 2 interactions with chain O Metal complexes: N:D.138, N:D.141, N:D.141, O:F.199, O:L.260 CA.15: 5 residues within 4Å: Chain M: F.199, N.259, L.260 Chain O: D.138, D.141 4 PLIP interactions: 2 interactions with chain M, 2 interactions with chain O Metal complexes: M:F.199, M:L.260, O:D.138, O:D.141 CA.16: 5 residues within 4Å: Chain P: D.138, D.141 Chain Q: F.199, N.259, L.260 4 PLIP interactions: 2 interactions with chain P, 2 interactions with chain Q Metal complexes: P:D.138, P:D.141, Q:F.199, Q:L.260 CA.17: 6 residues within 4Å: Chain Q: D.138, D.141 Chain R: F.199, K.200, N.259, L.260 5 PLIP interactions: 2 interactions with chain R, 3 interactions with chain Q Metal complexes: R:F.199, R:L.260, Q:D.138, Q:D.141, Q:D.141 CA.18: 5 residues within 4Å: Chain P: F.199, N.259, L.260 Chain R: D.138, D.141 4 PLIP interactions: 2 interactions with chain P, 2 interactions with chain R Metal complexes: P:F.199, P:L.260, R:D.138, R:D.141

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Silva, A.M. et al., Refined structure of southern bean mosaic virus at 2.9 A resolution. J.Mol.Biol. (1987)

Release Date

1985-07-17

Peptides

SOUTHERN BEAN MOSAIC VIRUS COAT PROTEIN: ABCDEFGHIJKLMNOPQR

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

G
A

H
B

I
C

J
A

K
B

L
C

M
A

N
B

O
C

P
A

Q
B

R
C

SOUTHERN BEAN MOSAIC VIRUS COAT PROTEIN

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