SMTL ID : 4tkp.1

Complex of Ubc13 with the RING domain of the TRIM5alpha retroviral restriction factor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.08 Å

Oligo State

hetero-1-1-mer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: R.71, R.86 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.71, A:R.86

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain B: C.31, H.33, C.57, C.60 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.31, B:H.33, B:C.57, B:C.60 ZN.3: 4 residues within 4Å: Chain B: C.16, C.19, C.36, C.39 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.16, B:C.19, B:C.36, B:C.39

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yudina, Z. et al., RING Dimerization Links Higher-Order Assembly of TRIM5 alpha to Synthesis of K63-Linked Polyubiquitin. Cell Rep (2015)

Release Date

2015-07-22

Peptides

Ubiquitin-conjugating enzyme E2 N: A
Tripartite motif-containing protein 5: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ubiquitin-conjugating enzyme E2 N

Tripartite motif-containing protein 5