- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-hexamer
- Ligands
- 2 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)
- 6 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 4 residues within 4Å:- Chain A: T.53, E.78, D.145
- Ligands: ANP.1
4 PLIP interactions:1 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:T.53, H2O.2, H2O.2, H2O.3
MG.5: 3 residues within 4Å:- Chain B: T.53, D.145
- Ligands: ADP.4
5 PLIP interactions:1 interactions with chain B, 4 Ligand-Water interactions- Metal complexes: B:T.53, H2O.8, H2O.8, H2O.8, H2O.8
MG.8: 4 residues within 4Å:- Chain C: T.53, E.77
- Chain D: K.224
- Ligands: ADP.7
5 PLIP interactions:1 interactions with chain C, 4 Ligand-Water interactions- Metal complexes: C:T.53, H2O.12, H2O.12, H2O.12, H2O.19
MG.11: 3 residues within 4Å:- Chain D: T.53, D.145
- Ligands: ADP.10
5 PLIP interactions:1 interactions with chain D, 4 Ligand-Water interactions- Metal complexes: D:T.53, H2O.19, H2O.19, H2O.19, H2O.19
MG.14: 4 residues within 4Å:- Chain E: T.53, E.77
- Chain F: K.224
- Ligands: ADP.13
5 PLIP interactions:1 interactions with chain E, 4 Ligand-Water interactions- Metal complexes: E:T.53, H2O.24, H2O.24, H2O.24, H2O.24
MG.17: 3 residues within 4Å:- Chain F: T.53, D.145
- Ligands: ANP.16
4 PLIP interactions:1 interactions with chain F, 3 Ligand-Water interactions- Metal complexes: F:T.53, H2O.29, H2O.30, H2O.30
- 6 x CL: CHLORIDE ION(Non-functional Binders)
CL.3: 3 residues within 4Å:- Chain A: R.218, T.238, I.239
Ligand excluded by PLIPCL.6: 3 residues within 4Å:- Chain B: R.218, T.238, I.239
Ligand excluded by PLIPCL.9: 4 residues within 4Å:- Chain C: R.218, T.238, I.239
- Chain D: K.232
Ligand excluded by PLIPCL.12: 3 residues within 4Å:- Chain D: R.218, T.238, I.239
Ligand excluded by PLIPCL.15: 4 residues within 4Å:- Chain E: R.218, T.238, I.239
- Chain F: K.232
Ligand excluded by PLIPCL.18: 4 residues within 4Å:- Chain A: K.232
- Chain F: R.218, T.238, I.239
Ligand excluded by PLIP- 4 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.4: 21 residues within 4Å:- Chain B: T.48, G.49, T.50, G.51, K.52, T.53, L.54, S.89, F.90, R.218, I.239, T.240, D.241
- Chain C: K.224, L.225, G.227, T.228, S.229, H.230, K.232
- Ligands: MG.5
27 PLIP interactions:13 interactions with chain B, 14 interactions with chain C- Hydrogen bonds: B:T.47, B:G.49, B:T.50, B:T.50, B:G.51, B:K.52, B:T.53, B:L.54, B:S.89, B:R.218, B:D.241, C:L.225, C:H.230
- Water bridges: B:R.218, C:K.224, C:K.224, C:R.226, C:R.226, C:G.227, C:G.227, C:S.229, C:S.229, C:K.232, C:K.232
- Salt bridges: B:K.52, C:K.224, C:K.224
ADP.7: 21 residues within 4Å:- Chain C: T.47, T.48, G.49, T.50, G.51, K.52, T.53, L.54, S.89, F.90, R.218, I.239, T.240, D.241
- Chain D: K.224, L.225, G.227, T.228, S.229, H.230
- Ligands: MG.8
25 PLIP interactions:15 interactions with chain C, 10 interactions with chain D- Hydrogen bonds: C:T.47, C:G.49, C:T.50, C:T.50, C:G.51, C:K.52, C:T.53, C:L.54, C:S.89, C:R.218, C:D.241, D:L.225, D:H.230
- Water bridges: C:K.52, C:K.52, C:R.218, D:K.224, D:K.224, D:R.226, D:R.226, D:S.229, D:H.230
- Salt bridges: C:K.52, D:K.224, D:K.224
ADP.10: 22 residues within 4Å:- Chain D: T.47, T.48, G.49, T.50, G.51, K.52, T.53, L.54, S.89, F.90, R.218, I.239, T.240, D.241
- Chain E: K.224, L.225, G.227, T.228, S.229, H.230, K.232
- Ligands: MG.11
31 PLIP interactions:19 interactions with chain D, 12 interactions with chain E- Hydrogen bonds: D:T.47, D:T.48, D:T.48, D:G.49, D:T.50, D:T.50, D:G.51, D:K.52, D:T.53, D:L.54, D:S.89, D:R.218, D:D.241, E:L.225, E:H.230
- Water bridges: D:K.52, D:T.53, D:R.218, D:D.241, D:D.241, E:R.226, E:R.226, E:R.226, E:R.226, E:S.229, E:H.230, E:K.232, E:K.232, E:K.232, E:K.232
- Salt bridges: D:K.52
ADP.13: 21 residues within 4Å:- Chain E: T.47, T.48, G.49, T.50, G.51, K.52, T.53, L.54, S.89, F.90, R.218, I.239, T.240, D.241
- Chain F: L.223, K.224, L.225, T.228, S.229, H.230
- Ligands: MG.14
22 PLIP interactions:14 interactions with chain E, 8 interactions with chain F- Hydrogen bonds: E:T.47, E:G.49, E:T.50, E:G.51, E:K.52, E:T.53, E:L.54, E:S.89, E:R.218, E:D.241, F:L.225, F:S.229, F:H.230
- Water bridges: E:K.52, E:K.52, E:R.218, F:K.224, F:K.224, F:K.224
- Salt bridges: E:K.52, F:K.224, F:K.224
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Abe, J. et al., Circadian rhythms. Atomic-scale origins of slowness in the cyanobacterial circadian clock. Science (2015)
- Release Date
- 2015-07-01
- Peptides
- Circadian clock protein kinase KaiC: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-hexamer
- Ligands
- 2 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)
- 6 x MG: MAGNESIUM ION(Non-covalent)
- 6 x CL: CHLORIDE ION(Non-functional Binders)
- 4 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Abe, J. et al., Circadian rhythms. Atomic-scale origins of slowness in the cyanobacterial circadian clock. Science (2015)
- Release Date
- 2015-07-01
- Peptides
- Circadian clock protein kinase KaiC: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F