SMTL ID : 4tlk.1

Crystal Structure of Human Transthyretin Ser85Pro/Glu92Pro Mutant

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.44 Å

Oligo State

homo-tetramer

Ligands

4 x NA: SODIUM ION(Non-functional Binders)

NA.1: 6 residues within 4Å: Chain A: C.2, P.3, L.4, G.49, L.50, T.51 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.4, A:L.4, A:G.49, A:L.50, A:T.51 NA.3: 5 residues within 4Å: Chain B: C.2, P.3, L.4, L.50, T.51 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:L.4, B:G.49, B:L.50, B:T.51, B:T.51 NA.6: 6 residues within 4Å: Chain C: C.2, P.3, L.4, G.49, L.50, T.51 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:L.4, C:L.4, C:G.49, C:L.50, C:T.51 NA.8: 5 residues within 4Å: Chain D: C.2, P.3, L.4, L.50, T.51 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:L.4, D:L.4, D:G.49, D:L.50, D:T.51

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 3 residues within 4Å: Chain B: V.12, I.76 Chain C: V.12 No protein-ligand interaction detected (PLIP) GOL.7: 3 residues within 4Å: Chain A: V.12 Chain D: V.12, I.76 No protein-ligand interaction detected (PLIP)

4 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.4: 13 residues within 4Å: Chain B: A.100, A.101, L.102, S.109, T.110, T.111 Chain D: A.100, A.101, L.102, S.109, T.110, T.111 Ligands: PEG.9 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain D Hydrogen bonds: B:L.102, B:S.109, D:L.102, D:S.109 PEG.5: 10 residues within 4Å: Chain A: W.33, K.62, E.64, H.82, P.84 Chain B: W.33, K.62, E.64, H.82, P.84 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:W.33, B:K.62, B:E.64 Water bridges: A:K.62 PEG.9: 13 residues within 4Å: Chain B: A.100, A.101, L.102, S.109, T.110, T.111 Chain D: A.100, A.101, L.102, S.109, T.110, T.111 Ligands: PEG.4 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain D Hydrogen bonds: B:L.102, B:S.109, D:L.102, D:S.109 PEG.10: 10 residues within 4Å: Chain C: W.33, K.62, E.64, H.82, P.84 Chain D: W.33, K.62, E.64, H.82, P.84 4 PLIP interactions: 3 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:W.33, D:K.62, D:E.64 Water bridges: C:K.62

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Saelices, L. et al., Uncovering the Mechanism of Aggregation of Human Transthyretin. J.Biol.Chem. (2015)

Release Date

2015-10-21

Peptides

Transthyretin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Transthyretin