SMTL ID : 4tlr.1

NS5b in complex with lactam-thiophene carboxylic acids

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.86 Å

Oligo State

monomer

Ligands

1 x 33H: 3-{(2R,5R)-5-cyclohexyl-2-[(2R)-2-hydroxypropyl]-3-oxomorpholin-4-yl}-5-(3,3-dimethylbut-1-yn-1-yl)thiophene-2-carboxylic acid(Non-covalent)

33H.1: 14 residues within 4Å: Chain A: L.419, R.422, M.423, L.474, H.475, S.476, Y.477, I.482, V.485, A.486, L.489, L.497, R.501, W.528 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:R.422, A:M.423, A:Y.477, A:V.485, A:L.489, A:L.497, A:W.528, A:W.528 Hydrogen bonds: A:S.476, A:Y.477, A:R.501

1 x 79Z: 5-cyclopropyl-2-(4-fluorophenyl)-6-[(2-hydroxyethyl)(methylsulfonyl)amino]-N-methyl-1-benzofuran-3-carboxamide(Non-covalent)

79Z.2: 18 residues within 4Å: Chain A: F.193, P.197, R.200, L.204, L.314, C.316, D.319, V.321, L.360, I.363, S.365, C.366, S.368, L.384, M.414, Y.415, Y.448, Y.555 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.193, A:F.193, A:L.204, A:V.321, A:Y.448, A:Y.448 Hydrogen bonds: A:R.200, A:S.365, A:S.365

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Barnes-Seeman, D. et al., Design and synthesis of lactam-thiophene carboxylic acids as potent hepatitis C virus polymerase inhibitors. Bioorg.Med.Chem.Lett. (2014)

Release Date

2014-12-10

Peptides

NS5b: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

NS5b