SMTL ID : 4tls.1

Crystal Structure of Human Transthyretin Glu92Pro Mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.35 Å

Oligo State

homo-tetramer

Ligands

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 8 residues within 4Å: Chain A: K.62, E.64, H.82, P.84 Chain B: W.33, K.62, V.86 Ligands: PO4.3 9 PLIP interactions: 7 interactions with chain A, 2 interactions with chain B Water bridges: A:W.33, A:K.62, A:K.62, A:K.62, A:K.62, B:K.62 Salt bridges: A:K.62, A:H.82, B:K.62 PO4.3: 7 residues within 4Å: Chain A: W.33, K.62, V.86 Chain B: K.62, E.64, H.82 Ligands: PO4.1 8 PLIP interactions: 4 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:W.33 Water bridges: A:K.62, A:K.62, B:K.62, B:K.62 Salt bridges: A:K.62, B:K.62, B:H.82 PO4.5: 8 residues within 4Å: Chain C: K.62, E.64, H.82, P.84 Chain D: W.33, K.62, V.86 Ligands: PO4.7 9 PLIP interactions: 7 interactions with chain C, 2 interactions with chain D Water bridges: C:W.33, C:K.62, C:K.62, C:K.62, C:K.62, D:K.62 Salt bridges: C:K.62, C:H.82, D:K.62 PO4.7: 7 residues within 4Å: Chain C: W.33, K.62, V.86 Chain D: K.62, E.64, H.82 Ligands: PO4.5 8 PLIP interactions: 4 interactions with chain C, 4 interactions with chain D Hydrogen bonds: C:W.33 Water bridges: C:K.62, C:K.62, D:K.62, D:K.62 Salt bridges: C:K.62, D:K.62, D:H.82

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 9 residues within 4Å: Chain A: L.102, S.104, S.107, Y.108, S.109 Chain B: S.109 Chain C: S.109 Chain D: L.102, S.109 6 PLIP interactions: 2 interactions with chain C, 1 interactions with chain D, 3 interactions with chain A Hydrogen bonds: C:S.109, C:S.109, D:S.104, A:S.104, A:S.104, A:Y.108 GOL.6: 9 residues within 4Å: Chain A: S.109 Chain B: L.102, S.109 Chain C: L.102, S.104, S.107, Y.108, S.109 Chain D: S.109 6 PLIP interactions: 3 interactions with chain C, 1 interactions with chain B, 2 interactions with chain A Hydrogen bonds: C:S.104, C:S.104, C:Y.108, B:S.104, A:S.109, A:S.109

2 x NA: SODIUM ION(Non-functional Binders)

NA.4: 5 residues within 4Å: Chain B: C.2, P.3, L.4, L.50, T.51 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:L.4, B:L.4, B:L.50, B:T.51 NA.8: 5 residues within 4Å: Chain D: C.2, P.3, L.4, L.50, T.51 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:L.4, D:L.4, D:L.50, D:T.51

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Saelices, L. et al., Uncovering the Mechanism of Aggregation of Human Transthyretin. J.Biol.Chem. (2015)

Release Date

2015-10-21

Peptides

Transthyretin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Transthyretin