- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.41 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 4 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
NAP.2: 25 residues within 4Å:- Chain A: K.79, Q.81, R.123, P.190, A.223, G.224, G.225, G.226, Q.227, S.228, E.231, I.248, P.250, N.294, Y.295, S.296, H.328, V.329, A.362, T.363, G.364, Y.365
- Chain D: Y.289
- Ligands: FAD.1, ORN.3
22 PLIP interactions:21 interactions with chain A, 1 interactions with chain D- Hydrophobic interactions: A:Q.227
- Hydrogen bonds: A:Q.81, A:Q.81, A:G.225, A:S.228, A:S.228, A:E.231, A:N.294, A:S.296, A:S.296, A:V.329, A:V.329, D:Y.289
- Water bridges: A:R.188, A:S.202, A:G.226, A:Q.227, A:V.297, A:A.362, A:G.364, A:Y.365
- pi-Cation interactions: A:H.328
NAP.8: 26 residues within 4Å:- Chain B: K.79, Q.81, R.123, R.188, P.190, A.223, G.224, G.225, G.226, Q.227, S.228, E.231, I.248, P.250, N.294, Y.295, S.296, H.328, V.329, A.362, T.363, G.364, Y.365
- Chain C: Y.289
- Ligands: FAD.7, ORN.9
26 PLIP interactions:26 interactions with chain B- Hydrophobic interactions: B:Q.81, B:Q.227
- Hydrogen bonds: B:Q.81, B:R.188, B:G.225, B:S.228, B:S.228, B:E.231, B:N.294, B:S.296, B:S.296, B:S.296, B:V.329, B:V.329
- Water bridges: B:Q.81, B:G.226, B:Q.227, B:Q.227, B:R.291, B:R.291, B:V.297, B:G.364, B:G.364, B:Y.365, B:Y.365
- pi-Cation interactions: B:H.328
NAP.13: 25 residues within 4Å:- Chain B: Y.289
- Chain C: K.79, Q.81, R.123, P.190, A.223, G.224, G.225, G.226, Q.227, S.228, E.231, I.248, P.250, N.294, Y.295, S.296, H.328, V.329, A.362, T.363, G.364, Y.365
- Ligands: FAD.12, ORN.14
26 PLIP interactions:1 interactions with chain B, 25 interactions with chain C- Hydrogen bonds: B:Y.289, C:G.225, C:S.228, C:S.228, C:E.231, C:N.294, C:S.296, C:S.296, C:V.329, C:V.329
- Hydrophobic interactions: C:Q.227
- Water bridges: C:Q.81, C:A.191, C:S.202, C:G.226, C:G.226, C:Q.227, C:Q.227, C:Q.227, C:R.291, C:R.291, C:S.296, C:S.296, C:G.364, C:Y.365
- pi-Cation interactions: C:H.328
NAP.18: 25 residues within 4Å:- Chain A: Y.289
- Chain D: K.79, Q.81, R.123, P.190, A.223, G.224, G.225, G.226, Q.227, S.228, E.231, I.248, P.250, N.294, Y.295, S.296, H.328, V.329, A.362, T.363, G.364, Y.365
- Ligands: FAD.17, ORN.19
25 PLIP interactions:23 interactions with chain D, 2 interactions with chain A- Hydrophobic interactions: D:Q.227
- Hydrogen bonds: D:G.225, D:S.228, D:S.228, D:E.231, D:N.294, D:S.296, D:S.296, D:V.329, D:V.329, A:Y.289, A:Y.289
- Water bridges: D:Q.81, D:R.188, D:R.188, D:R.188, D:S.202, D:G.226, D:G.226, D:Q.227, D:Q.227, D:E.231, D:G.364, D:Y.365
- pi-Cation interactions: D:H.328
- 4 x ORN: L-ornithine(Non-covalent)
ORN.3: 8 residues within 4Å:- Chain A: Q.81, V.82, K.86, N.264, F.267, N.294, S.425
- Ligands: NAP.2
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:V.82
- Hydrogen bonds: A:N.264, A:S.425
- Water bridges: A:Q.81, A:N.264, A:T.293
- Salt bridges: A:K.86
ORN.9: 9 residues within 4Å:- Chain B: Q.81, V.82, K.86, N.264, F.267, T.293, N.294, S.425
- Ligands: NAP.8
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:V.82
- Hydrogen bonds: B:Q.81, B:N.264, B:T.293, B:S.425
- Salt bridges: B:K.86
ORN.14: 8 residues within 4Å:- Chain C: Q.81, V.82, K.86, N.264, F.267, N.294, S.425
- Ligands: NAP.13
7 PLIP interactions:7 interactions with chain C- Hydrophobic interactions: C:V.82
- Hydrogen bonds: C:Q.81, C:N.264, C:N.264
- Water bridges: C:Q.81, C:K.86
- Salt bridges: C:K.86
ORN.19: 8 residues within 4Å:- Chain D: Q.81, V.82, K.86, N.264, F.267, N.294, S.425
- Ligands: NAP.18
6 PLIP interactions:6 interactions with chain D- Hydrophobic interactions: D:V.82
- Hydrogen bonds: D:N.264, D:N.264, D:T.293
- Water bridges: D:N.264
- Salt bridges: D:K.86
- 8 x K: POTASSIUM ION(Non-covalent)
K.4: 4 residues within 4Å:- Chain A: L.49, E.50, S.52, A.54
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:L.49, A:S.52
K.5: 6 residues within 4Å:- Chain A: E.134, S.135, L.137, H.139, E.140
- Ligands: K.6
4 PLIP interactions:3 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:E.134, A:L.137, A:H.139, H2O.2
K.6: 4 residues within 4Å:- Chain A: S.135, K.136, L.137
- Ligands: K.5
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:S.135, A:L.137
K.10: 4 residues within 4Å:- Chain B: L.49, E.50, S.52, A.54
2 PLIP interactions:2 interactions with chain B- Metal complexes: B:L.49, B:S.52
K.11: 4 residues within 4Å:- Chain B: E.134, S.135, L.137, H.139
No protein-ligand interaction detected (PLIP)K.15: 4 residues within 4Å:- Chain C: L.49, E.50, S.52, A.54
1 PLIP interactions:1 interactions with chain C- Metal complexes: C:S.52
K.16: 5 residues within 4Å:- Chain C: E.134, S.135, L.137, H.139, E.140
2 PLIP interactions:2 interactions with chain C- Metal complexes: C:E.134, C:H.139
K.20: 4 residues within 4Å:- Chain D: L.49, E.50, S.52, A.54
1 PLIP interactions:1 interactions with chain D- Metal complexes: D:S.52
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Setser, J.W. et al., Crystallographic Evidence of Drastic Conformational Changes in the Active Site of a Flavin-Dependent N-Hydroxylase. Biochemistry (2014)
- Release Date
- 2014-09-17
- Peptides
- KtzI: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.41 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 4 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- 4 x ORN: L-ornithine(Non-covalent)
- 8 x K: POTASSIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Setser, J.W. et al., Crystallographic Evidence of Drastic Conformational Changes in the Active Site of a Flavin-Dependent N-Hydroxylase. Biochemistry (2014)
- Release Date
- 2014-09-17
- Peptides
- KtzI: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D