- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.65 Å
- Oligo State
- homo-24-mer
- Ligands
- 18 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 72 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
MPD.2: 7 residues within 4Å:- Chain A: K.2, G.3, D.4, V.111, H.112, D.113
- Chain D: R.102
Ligand excluded by PLIPMPD.3: 6 residues within 4Å:- Chain A: R.39, H.43, Y.133, D.157
- Chain G: K.38, H.155
Ligand excluded by PLIPMPD.4: 6 residues within 4Å:- Chain A: E.60, R.61, F.64
- Chain D: E.125, E.128, E.129
Ligand excluded by PLIPMPD.7: 8 residues within 4Å:- Chain B: K.2, G.3, D.4, L.65, V.111, H.112, D.113
- Chain F: R.102
Ligand excluded by PLIPMPD.8: 5 residues within 4Å:- Chain B: R.39, H.43, Y.133
- Chain I: K.38, H.155
Ligand excluded by PLIPMPD.9: 6 residues within 4Å:- Chain B: E.60, R.61, F.64
- Chain F: E.125, E.128, E.129
Ligand excluded by PLIPMPD.12: 9 residues within 4Å:- Chain C: K.2, G.3, D.4, L.65, V.111, H.112, D.113
- Chain Q: R.102, E.128
Ligand excluded by PLIPMPD.13: 5 residues within 4Å:- Chain C: R.39, H.43, Y.133
- Chain D: K.38, H.155
Ligand excluded by PLIPMPD.14: 6 residues within 4Å:- Chain C: E.60, R.61, F.64
- Chain Q: E.125, E.128, E.129
Ligand excluded by PLIPMPD.17: 7 residues within 4Å:- Chain D: K.2, G.3, D.4, V.111, H.112, D.113
- Chain S: R.102
Ligand excluded by PLIPMPD.18: 5 residues within 4Å:- Chain B: K.38, H.155
- Chain D: R.39, H.43, Y.133
Ligand excluded by PLIPMPD.19: 6 residues within 4Å:- Chain D: E.60, R.61, F.64
- Chain S: E.125, E.128, E.129
Ligand excluded by PLIPMPD.22: 7 residues within 4Å:- Chain E: K.2, G.3, D.4, V.111, H.112, D.113
- Chain H: R.102
Ligand excluded by PLIPMPD.23: 6 residues within 4Å:- Chain E: R.39, H.43, Y.133, D.157
- Chain K: K.38, H.155
Ligand excluded by PLIPMPD.24: 6 residues within 4Å:- Chain E: E.60, R.61, F.64
- Chain H: E.125, E.128, E.129
Ligand excluded by PLIPMPD.27: 8 residues within 4Å:- Chain F: K.2, G.3, D.4, L.65, V.111, H.112, D.113
- Chain J: R.102
Ligand excluded by PLIPMPD.28: 5 residues within 4Å:- Chain A: K.38, H.155
- Chain F: R.39, H.43, Y.133
Ligand excluded by PLIPMPD.29: 6 residues within 4Å:- Chain F: E.60, R.61, F.64
- Chain J: E.125, E.128, E.129
Ligand excluded by PLIPMPD.32: 9 residues within 4Å:- Chain G: K.2, G.3, D.4, L.65, V.111, H.112, D.113
- Chain M: R.102, E.128
Ligand excluded by PLIPMPD.33: 5 residues within 4Å:- Chain G: R.39, H.43, Y.133
- Chain H: K.38, H.155
Ligand excluded by PLIPMPD.34: 6 residues within 4Å:- Chain G: E.60, R.61, F.64
- Chain M: E.125, E.128, E.129
Ligand excluded by PLIPMPD.37: 7 residues within 4Å:- Chain H: K.2, G.3, D.4, V.111, H.112, D.113
- Chain O: R.102
Ligand excluded by PLIPMPD.38: 5 residues within 4Å:- Chain F: K.38, H.155
- Chain H: R.39, H.43, Y.133
Ligand excluded by PLIPMPD.39: 6 residues within 4Å:- Chain H: E.60, R.61, F.64
- Chain O: E.125, E.128, E.129
Ligand excluded by PLIPMPD.42: 7 residues within 4Å:- Chain I: K.2, G.3, D.4, V.111, H.112, D.113
- Chain L: R.102
Ligand excluded by PLIPMPD.43: 6 residues within 4Å:- Chain C: K.38, H.155
- Chain I: R.39, H.43, Y.133, D.157
Ligand excluded by PLIPMPD.44: 6 residues within 4Å:- Chain I: E.60, R.61, F.64
- Chain L: E.125, E.128, E.129
Ligand excluded by PLIPMPD.47: 8 residues within 4Å:- Chain B: R.102
- Chain J: K.2, G.3, D.4, L.65, V.111, H.112, D.113
Ligand excluded by PLIPMPD.48: 5 residues within 4Å:- Chain E: K.38, H.155
- Chain J: R.39, H.43, Y.133
Ligand excluded by PLIPMPD.49: 6 residues within 4Å:- Chain B: E.125, E.128, E.129
- Chain J: E.60, R.61, F.64
Ligand excluded by PLIPMPD.52: 9 residues within 4Å:- Chain K: K.2, G.3, D.4, L.65, V.111, H.112, D.113
- Chain U: R.102, E.128
Ligand excluded by PLIPMPD.53: 5 residues within 4Å:- Chain K: R.39, H.43, Y.133
- Chain L: K.38, H.155
Ligand excluded by PLIPMPD.54: 6 residues within 4Å:- Chain K: E.60, R.61, F.64
- Chain U: E.125, E.128, E.129
Ligand excluded by PLIPMPD.57: 7 residues within 4Å:- Chain L: K.2, G.3, D.4, V.111, H.112, D.113
- Chain W: R.102
Ligand excluded by PLIPMPD.58: 5 residues within 4Å:- Chain J: K.38, H.155
- Chain L: R.39, H.43, Y.133
Ligand excluded by PLIPMPD.59: 6 residues within 4Å:- Chain L: E.60, R.61, F.64
- Chain W: E.125, E.128, E.129
Ligand excluded by PLIPMPD.62: 7 residues within 4Å:- Chain M: K.2, G.3, D.4, V.111, H.112, D.113
- Chain P: R.102
Ligand excluded by PLIPMPD.63: 6 residues within 4Å:- Chain M: R.39, H.43, Y.133, D.157
- Chain S: K.38, H.155
Ligand excluded by PLIPMPD.64: 6 residues within 4Å:- Chain M: E.60, R.61, F.64
- Chain P: E.125, E.128, E.129
Ligand excluded by PLIPMPD.67: 8 residues within 4Å:- Chain N: K.2, G.3, D.4, L.65, V.111, H.112, D.113
- Chain R: R.102
Ligand excluded by PLIPMPD.68: 5 residues within 4Å:- Chain N: R.39, H.43, Y.133
- Chain U: K.38, H.155
Ligand excluded by PLIPMPD.69: 6 residues within 4Å:- Chain N: E.60, R.61, F.64
- Chain R: E.125, E.128, E.129
Ligand excluded by PLIPMPD.72: 9 residues within 4Å:- Chain E: R.102, E.128
- Chain O: K.2, G.3, D.4, L.65, V.111, H.112, D.113
Ligand excluded by PLIPMPD.73: 5 residues within 4Å:- Chain O: R.39, H.43, Y.133
- Chain P: K.38, H.155
Ligand excluded by PLIPMPD.74: 6 residues within 4Å:- Chain E: E.125, E.128, E.129
- Chain O: E.60, R.61, F.64
Ligand excluded by PLIPMPD.77: 7 residues within 4Å:- Chain G: R.102
- Chain P: K.2, G.3, D.4, V.111, H.112, D.113
Ligand excluded by PLIPMPD.78: 5 residues within 4Å:- Chain N: K.38, H.155
- Chain P: R.39, H.43, Y.133
Ligand excluded by PLIPMPD.79: 6 residues within 4Å:- Chain G: E.125, E.128, E.129
- Chain P: E.60, R.61, F.64
Ligand excluded by PLIPMPD.82: 7 residues within 4Å:- Chain Q: K.2, G.3, D.4, V.111, H.112, D.113
- Chain T: R.102
Ligand excluded by PLIPMPD.83: 6 residues within 4Å:- Chain Q: R.39, H.43, Y.133, D.157
- Chain W: K.38, H.155
Ligand excluded by PLIPMPD.84: 6 residues within 4Å:- Chain Q: E.60, R.61, F.64
- Chain T: E.125, E.128, E.129
Ligand excluded by PLIPMPD.87: 8 residues within 4Å:- Chain R: K.2, G.3, D.4, L.65, V.111, H.112, D.113
- Chain V: R.102
Ligand excluded by PLIPMPD.88: 5 residues within 4Å:- Chain M: K.38, H.155
- Chain R: R.39, H.43, Y.133
Ligand excluded by PLIPMPD.89: 6 residues within 4Å:- Chain R: E.60, R.61, F.64
- Chain V: E.125, E.128, E.129
Ligand excluded by PLIPMPD.92: 9 residues within 4Å:- Chain A: R.102, E.128
- Chain S: K.2, G.3, D.4, L.65, V.111, H.112, D.113
Ligand excluded by PLIPMPD.93: 5 residues within 4Å:- Chain S: R.39, H.43, Y.133
- Chain T: K.38, H.155
Ligand excluded by PLIPMPD.94: 6 residues within 4Å:- Chain A: E.125, E.128, E.129
- Chain S: E.60, R.61, F.64
Ligand excluded by PLIPMPD.97: 7 residues within 4Å:- Chain C: R.102
- Chain T: K.2, G.3, D.4, V.111, H.112, D.113
Ligand excluded by PLIPMPD.98: 5 residues within 4Å:- Chain R: K.38, H.155
- Chain T: R.39, H.43, Y.133
Ligand excluded by PLIPMPD.99: 6 residues within 4Å:- Chain C: E.125, E.128, E.129
- Chain T: E.60, R.61, F.64
Ligand excluded by PLIPMPD.102: 7 residues within 4Å:- Chain U: K.2, G.3, D.4, V.111, H.112, D.113
- Chain X: R.102
Ligand excluded by PLIPMPD.103: 6 residues within 4Å:- Chain O: K.38, H.155
- Chain U: R.39, H.43, Y.133, D.157
Ligand excluded by PLIPMPD.104: 6 residues within 4Å:- Chain U: E.60, R.61, F.64
- Chain X: E.125, E.128, E.129
Ligand excluded by PLIPMPD.107: 8 residues within 4Å:- Chain N: R.102
- Chain V: K.2, G.3, D.4, L.65, V.111, H.112, D.113
Ligand excluded by PLIPMPD.108: 5 residues within 4Å:- Chain Q: K.38, H.155
- Chain V: R.39, H.43, Y.133
Ligand excluded by PLIPMPD.109: 6 residues within 4Å:- Chain N: E.125, E.128, E.129
- Chain V: E.60, R.61, F.64
Ligand excluded by PLIPMPD.112: 9 residues within 4Å:- Chain I: R.102, E.128
- Chain W: K.2, G.3, D.4, L.65, V.111, H.112, D.113
Ligand excluded by PLIPMPD.113: 5 residues within 4Å:- Chain W: R.39, H.43, Y.133
- Chain X: K.38, H.155
Ligand excluded by PLIPMPD.114: 6 residues within 4Å:- Chain I: E.125, E.128, E.129
- Chain W: E.60, R.61, F.64
Ligand excluded by PLIPMPD.117: 7 residues within 4Å:- Chain K: R.102
- Chain X: K.2, G.3, D.4, V.111, H.112, D.113
Ligand excluded by PLIPMPD.118: 5 residues within 4Å:- Chain V: K.38, H.155
- Chain X: R.39, H.43, Y.133
Ligand excluded by PLIPMPD.119: 6 residues within 4Å:- Chain K: E.125, E.128, E.129
- Chain X: E.60, R.61, F.64
Ligand excluded by PLIP- 24 x NA: SODIUM ION(Non-functional Binders)
NA.5: 3 residues within 4Å:- Chain A: D.132, T.136
- Chain G: D.34
Ligand excluded by PLIPNA.10: 3 residues within 4Å:- Chain B: D.132, T.136
- Chain I: D.34
Ligand excluded by PLIPNA.15: 3 residues within 4Å:- Chain C: D.132, T.136
- Chain D: D.34
Ligand excluded by PLIPNA.20: 3 residues within 4Å:- Chain B: D.34
- Chain D: D.132, T.136
Ligand excluded by PLIPNA.25: 3 residues within 4Å:- Chain E: D.132, T.136
- Chain K: D.34
Ligand excluded by PLIPNA.30: 3 residues within 4Å:- Chain A: D.34
- Chain F: D.132, T.136
Ligand excluded by PLIPNA.35: 3 residues within 4Å:- Chain G: D.132, T.136
- Chain H: D.34
Ligand excluded by PLIPNA.40: 3 residues within 4Å:- Chain F: D.34
- Chain H: D.132, T.136
Ligand excluded by PLIPNA.45: 3 residues within 4Å:- Chain C: D.34
- Chain I: D.132, T.136
Ligand excluded by PLIPNA.50: 3 residues within 4Å:- Chain E: D.34
- Chain J: D.132, T.136
Ligand excluded by PLIPNA.55: 3 residues within 4Å:- Chain K: D.132, T.136
- Chain L: D.34
Ligand excluded by PLIPNA.60: 3 residues within 4Å:- Chain J: D.34
- Chain L: D.132, T.136
Ligand excluded by PLIPNA.65: 3 residues within 4Å:- Chain M: D.132, T.136
- Chain S: D.34
Ligand excluded by PLIPNA.70: 3 residues within 4Å:- Chain N: D.132, T.136
- Chain U: D.34
Ligand excluded by PLIPNA.75: 3 residues within 4Å:- Chain O: D.132, T.136
- Chain P: D.34
Ligand excluded by PLIPNA.80: 3 residues within 4Å:- Chain N: D.34
- Chain P: D.132, T.136
Ligand excluded by PLIPNA.85: 3 residues within 4Å:- Chain Q: D.132, T.136
- Chain W: D.34
Ligand excluded by PLIPNA.90: 3 residues within 4Å:- Chain M: D.34
- Chain R: D.132, T.136
Ligand excluded by PLIPNA.95: 3 residues within 4Å:- Chain S: D.132, T.136
- Chain T: D.34
Ligand excluded by PLIPNA.100: 3 residues within 4Å:- Chain R: D.34
- Chain T: D.132, T.136
Ligand excluded by PLIPNA.105: 3 residues within 4Å:- Chain O: D.34
- Chain U: D.132, T.136
Ligand excluded by PLIPNA.110: 3 residues within 4Å:- Chain Q: D.34
- Chain V: D.132, T.136
Ligand excluded by PLIPNA.115: 3 residues within 4Å:- Chain W: D.132, T.136
- Chain X: D.34
Ligand excluded by PLIPNA.120: 3 residues within 4Å:- Chain V: D.34
- Chain X: D.132, T.136
Ligand excluded by PLIP- 6 x K: POTASSIUM ION(Non-covalent)
K.6: 8 residues within 4Å:- Chain B: N.148, Q.151
- Chain C: N.148, Q.151
- Chain D: N.148, Q.151
- Chain I: N.148, Q.151
No protein-ligand interaction detected (PLIP)K.26: 8 residues within 4Å:- Chain A: N.148, Q.151
- Chain F: N.148, Q.151
- Chain G: N.148, Q.151
- Chain H: N.148, Q.151
No protein-ligand interaction detected (PLIP)K.46: 8 residues within 4Å:- Chain E: N.148, Q.151
- Chain J: N.148, Q.151
- Chain K: N.148, Q.151
- Chain L: N.148, Q.151
No protein-ligand interaction detected (PLIP)K.66: 8 residues within 4Å:- Chain N: N.148, Q.151
- Chain O: N.148, Q.151
- Chain P: N.148, Q.151
- Chain U: N.148, Q.151
No protein-ligand interaction detected (PLIP)K.86: 8 residues within 4Å:- Chain M: N.148, Q.151
- Chain R: N.148, Q.151
- Chain S: N.148, Q.151
- Chain T: N.148, Q.151
No protein-ligand interaction detected (PLIP)K.106: 8 residues within 4Å:- Chain Q: N.148, Q.151
- Chain V: N.148, Q.151
- Chain W: N.148, Q.151
- Chain X: N.148, Q.151
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yao, H. et al., Concerted motions networking pores and distant ferroxidase centers enable bacterioferritin function and iron traffic. Biochemistry (2015)
- Release Date
- 2015-02-11
- Peptides
- Bacterioferritin: ABCDEFGHIJKLMNOPQRSTUVWX
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
AF
BG
CH
DI
AJ
BK
CL
DM
AN
BO
CP
DQ
AR
BS
CT
DU
AV
BW
CX
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.65 Å
- Oligo State
- homo-24-mer
- Ligands
- 18 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 72 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- 24 x NA: SODIUM ION(Non-functional Binders)
- 6 x K: POTASSIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yao, H. et al., Concerted motions networking pores and distant ferroxidase centers enable bacterioferritin function and iron traffic. Biochemistry (2015)
- Release Date
- 2015-02-11
- Peptides
- Bacterioferritin: ABCDEFGHIJKLMNOPQRSTUVWX
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
AF
BG
CH
DI
AJ
BK
CL
DM
AN
BO
CP
DQ
AR
BS
CT
DU
AV
BW
CX
D