SMTL ID : 4tqe.1

Structure of tau peptide in complex with Tau5 antibody Fab fragment

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

hetero-1-1-1-mer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: S.158, E.159 Ligands: NA.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.158, A:E.159 SO4.2: 1 residues within 4Å: Chain A: K.112 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.112 SO4.3: 2 residues within 4Å: Chain A: R.113, D.175 2 PLIP interactions: 2 interactions with chain A Water bridges: A:D.175 Salt bridges: A:R.113 SO4.4: 3 residues within 4Å: Chain A: N.166, W.168 Ligands: NA.7 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.166 SO4.8: 4 residues within 4Å: Chain B: T.161, S.164, N.204, D.215 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.161, B:S.164

4 x NA: SODIUM ION(Non-functional Binders)

NA.5: 2 residues within 4Å: Chain A: S.158 Ligands: SO4.1 No protein-ligand interaction detected (PLIP) NA.6: 4 residues within 4Å: Chain A: V.13, S.14, D.17, K.112 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.14, A:D.17, A:D.17 Water bridges: A:S.14 NA.7: 3 residues within 4Å: Chain A: L.165, N.166 Ligands: SO4.4 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.166 NA.9: 3 residues within 4Å: Chain B: S.14, S.120, S.121 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.14, B:S.14

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.10: 8 residues within 4Å: Chain A: Q.43, G.46, Q.47 Chain B: Q.39, V.93, F.95, Q.113, G.114 4 PLIP interactions: 4 interactions with chain B Water bridges: B:Q.39, B:V.93, B:Q.113, B:T.116

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cehlar, O. et al., Structure of tau peptide in complex with Tau5 antibody Fab fragment. To Be Published

Release Date

2015-07-29

Peptides

If kappa light chain: A
Fab heavy chain: B
Microtubule-associated protein tau: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

C
A

If kappa light chain

Fab heavy chain

Microtubule-associated protein tau

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