SMTL ID : 4tr2.3 (2 other biounits)

Crystal structure of PvSUB1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-dimer

Ligands

8 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: D.297, D.341, V.399, N.402, I.404, I.406 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.297, A:D.341, A:V.399, A:I.404, A:I.406 CA.2: 6 residues within 4Å: Chain A: E.145, N.146, T.149, S.150, P.151, G.206 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:N.146, A:T.149, A:P.151, A:G.206 CA.3: 6 residues within 4Å: Chain A: E.352, D.360, D.362, N.364, V.366, D.369 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.352, A:D.360, A:D.362, A:V.366, A:D.369 CA.4: 6 residues within 4Å: Chain A: E.352, G.355, R.356, V.359, D.361, D.368 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.352, A:R.356, A:V.359, A:D.361, A:D.368 CA.8: 6 residues within 4Å: Chain B: D.297, D.341, V.399, N.402, I.404, I.406 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.297, B:D.341, B:V.399, B:I.404, B:I.406 CA.9: 6 residues within 4Å: Chain B: E.145, N.146, T.149, S.150, P.151, G.206 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:E.145, B:N.146, B:P.151, B:G.206 CA.10: 6 residues within 4Å: Chain B: E.352, D.360, D.362, N.364, V.366, D.369 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.352, B:D.360, B:D.362, B:V.366, B:D.369 CA.11: 5 residues within 4Å: Chain B: E.352, R.356, V.359, D.361, D.368 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.352, B:R.356, B:V.359, B:D.368, H2O.1

5 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.5: 5 residues within 4Å: Chain A: D.454, E.455, Y.456, H.500, Y.502 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.456, A:Y.502 Salt bridges: A:H.500 PO4.6: 6 residues within 4Å: Chain A: F.295, Q.315, N.319, G.400, N.401, H.412 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.319, A:N.319, A:G.400, A:N.401 Salt bridges: A:H.412 PO4.7: 4 residues within 4Å: Chain A: E.145, H.147, S.152, E.155 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.145, A:E.145 Salt bridges: A:H.147 PO4.12: 5 residues within 4Å: Chain B: D.454, E.455, Y.456, H.500, Y.502 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.454, B:Y.456 Salt bridges: B:H.500 PO4.13: 6 residues within 4Å: Chain A: R.468 Chain B: E.145, H.147, S.152, F.154, E.155 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:S.152, A:R.468 Salt bridges: B:H.147

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Giganti, D. et al., A novel Plasmodium-specific prodomain fold regulates the malaria drug target SUB1 subtilase. Nat Commun (2014)

Release Date

2014-09-17

Peptides

Subtilisin-like 1 serine protease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Subtilisin-like 1 serine protease

Related Entries With Identical Sequence