- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.77 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x FMC: (1S)-1-(7-amino-1H-pyrazolo[4,3-d]pyrimidin-3-yl)-1,4-anhydro-D-ribitol(Non-covalent)
- 6 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.2: 9 residues within 4Å:- Chain A: P.19, G.20, R.24, R.87, A.89, S.90, E.181
- Chain C: R.43
- Ligands: FMC.1
7 PLIP interactions:6 interactions with chain A, 1 interactions with chain C- Hydrogen bonds: A:G.20, A:V.88, A:S.90, A:S.90
- Salt bridges: A:R.24, A:R.87, C:R.43
PO4.3: 8 residues within 4Å:- Chain B: P.19, G.20, R.87, V.88, A.89, S.90
- Chain E: R.43
- Ligands: FMC.4
7 PLIP interactions:6 interactions with chain B, 1 interactions with chain E- Hydrogen bonds: B:G.20, B:D.21, B:S.90, B:S.90, B:S.90
- Salt bridges: B:R.87, E:R.43
PO4.5: 8 residues within 4Å:- Chain A: R.43
- Chain C: P.19, G.20, R.87, V.88, A.89, S.90
- Ligands: FMC.6
8 PLIP interactions:5 interactions with chain C, 3 interactions with chain A- Hydrogen bonds: C:G.20, C:S.90
- Water bridges: C:D.21, C:D.21, A:R.43, A:R.43
- Salt bridges: C:R.87, A:R.43
PO4.8: 9 residues within 4Å:- Chain D: P.19, G.20, R.24, R.87, A.89, S.90, E.181
- Chain F: R.43
- Ligands: FMC.7
7 PLIP interactions:6 interactions with chain D, 1 interactions with chain F- Hydrogen bonds: D:G.20, D:V.88, D:S.90, D:S.90
- Salt bridges: D:R.24, D:R.87, F:R.43
PO4.9: 8 residues within 4Å:- Chain B: R.43
- Chain E: P.19, G.20, R.87, V.88, A.89, S.90
- Ligands: FMC.10
7 PLIP interactions:6 interactions with chain E, 1 interactions with chain B- Hydrogen bonds: E:G.20, E:D.21, E:S.90, E:S.90, E:S.90
- Salt bridges: E:R.87, B:R.43
PO4.11: 8 residues within 4Å:- Chain D: R.43
- Chain F: P.19, G.20, R.87, V.88, A.89, S.90
- Ligands: FMC.12
8 PLIP interactions:5 interactions with chain F, 3 interactions with chain D- Hydrogen bonds: F:G.20, F:S.90
- Water bridges: F:D.21, F:D.21, D:R.43, D:R.43
- Salt bridges: F:R.87, D:R.43
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Stefanic, Z. et al., Crystallographic snapshots of ligand binding to hexameric purine nucleoside phosphorylase and kinetic studies give insight into the mechanism of catalysis. Sci Rep (2018)
- Release Date
- 2015-07-08
- Peptides
- Purine nucleoside phosphorylase DeoD-type: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
AE
BF
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.77 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x FMC: (1S)-1-(7-amino-1H-pyrazolo[4,3-d]pyrimidin-3-yl)-1,4-anhydro-D-ribitol(Non-covalent)
- 6 x PO4: PHOSPHATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Stefanic, Z. et al., Crystallographic snapshots of ligand binding to hexameric purine nucleoside phosphorylase and kinetic studies give insight into the mechanism of catalysis. Sci Rep (2018)
- Release Date
- 2015-07-08
- Peptides
- Purine nucleoside phosphorylase DeoD-type: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
AE
BF
C