- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x PO4: PHOSPHATE ION(Non-functional Binders)
- 2 x FMC: (1S)-1-(7-amino-1H-pyrazolo[4,3-d]pyrimidin-3-yl)-1,4-anhydro-D-ribitol(Non-covalent)
FMC.3: 14 residues within 4Å:- Chain C: M.64, R.87, S.90, C.91, G.92, F.159, V.178, E.179, M.180, E.181, S.203
- Chain F: H.4, R.43
- Ligands: PO4.4
6 PLIP interactions:4 interactions with chain C, 2 interactions with chain F- Hydrogen bonds: C:M.180, C:E.181, C:S.203, C:S.203, F:H.4, F:R.43
FMC.8: 14 residues within 4Å:- Chain A: H.4, R.43
- Chain D: M.64, R.87, S.90, C.91, G.92, F.159, V.178, E.179, M.180, E.181, S.203
- Ligands: PO4.7
6 PLIP interactions:2 interactions with chain A, 4 interactions with chain D- Hydrogen bonds: A:H.4, A:R.43, D:S.90, D:M.180, D:E.181, D:S.203
- 6 x SO4: SULFATE ION(Non-functional Binders)
SO4.5: 3 residues within 4Å:- Chain C: T.219, N.222, K.226
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:T.219, C:T.219, C:N.222
- Salt bridges: C:K.226
SO4.6: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)SO4.9: 2 residues within 4Å:- Chain D: H.97, R.149
3 PLIP interactions:3 interactions with chain D- Water bridges: D:H.97
- Salt bridges: D:H.97, D:R.149
SO4.11: 3 residues within 4Å:- Chain E: T.220, N.222, K.226
3 PLIP interactions:3 interactions with chain E- Hydrogen bonds: E:N.222
- Water bridges: E:N.222
- Salt bridges: E:K.226
SO4.13: 1 residues within 4Å:- Chain F: N.222
2 PLIP interactions:2 interactions with chain F- Hydrogen bonds: F:N.222
- Salt bridges: F:K.226
SO4.14: 2 residues within 4Å:- Chain F: H.97, R.149
2 PLIP interactions:2 interactions with chain F- Salt bridges: F:H.97, F:R.149
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Stefanic, Z. et al., Crystallographic snapshots of ligand binding to hexameric purine nucleoside phosphorylase and kinetic studies give insight into the mechanism of catalysis. Sci Rep (2018)
- Release Date
- 2015-07-08
- Peptides
- Purine nucleoside phosphorylase DeoD-type: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x PO4: PHOSPHATE ION(Non-functional Binders)
- 2 x FMC: (1S)-1-(7-amino-1H-pyrazolo[4,3-d]pyrimidin-3-yl)-1,4-anhydro-D-ribitol(Non-covalent)
- 6 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Stefanic, Z. et al., Crystallographic snapshots of ligand binding to hexameric purine nucleoside phosphorylase and kinetic studies give insight into the mechanism of catalysis. Sci Rep (2018)
- Release Date
- 2015-07-08
- Peptides
- Purine nucleoside phosphorylase DeoD-type: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F