- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.89 Å
- Oligo State
- homo-hexamer
- Ligands
- 4 x FMC: (1S)-1-(7-amino-1H-pyrazolo[4,3-d]pyrimidin-3-yl)-1,4-anhydro-D-ribitol(Non-covalent)
- 6 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.2: 10 residues within 4Å:- Chain A: P.19, G.20, R.24, R.87, V.88, G.89, S.90, E.181
- Chain D: R.43
- Ligands: FMC.1
7 PLIP interactions:6 interactions with chain A, 1 interactions with chain D- Hydrogen bonds: A:G.20, A:S.90, A:S.90, A:S.90
- Salt bridges: A:R.24, A:R.87, D:R.43
PO4.3: 8 residues within 4Å:- Chain B: P.19, G.20, R.24, R.87, V.88, G.89, S.90
- Chain E: R.43
9 PLIP interactions:1 interactions with chain E, 8 interactions with chain B- Salt bridges: E:R.43, B:R.87
- Hydrogen bonds: B:G.20, B:R.24, B:S.90, B:S.90
- Water bridges: B:D.21, B:D.21, B:R.87
PO4.5: 8 residues within 4Å:- Chain C: P.19, G.20, R.87, V.88, G.89, S.90
- Chain F: R.43
- Ligands: FMC.4
7 PLIP interactions:6 interactions with chain C, 1 interactions with chain F- Hydrogen bonds: C:G.20, C:S.90, C:S.90
- Water bridges: C:D.21, C:D.21
- Salt bridges: C:R.87, F:R.43
PO4.8: 8 residues within 4Å:- Chain A: R.43
- Chain D: P.19, G.20, R.87, V.88, G.89, S.90
- Ligands: FMC.9
6 PLIP interactions:5 interactions with chain D, 1 interactions with chain A- Hydrogen bonds: D:G.20, D:S.90
- Water bridges: D:D.21, D:D.21
- Salt bridges: D:R.87, A:R.43
PO4.11: 7 residues within 4Å:- Chain B: R.43
- Chain E: P.19, G.20, R.87, V.88, G.89, S.90
7 PLIP interactions:6 interactions with chain E, 1 interactions with chain B- Hydrogen bonds: E:G.20, E:S.90, E:S.90
- Water bridges: E:D.21, E:D.21
- Salt bridges: E:R.87, B:R.43
PO4.14: 10 residues within 4Å:- Chain C: R.43
- Chain F: P.19, G.20, R.24, R.87, V.88, G.89, S.90, E.181
- Ligands: FMC.13
7 PLIP interactions:6 interactions with chain F, 1 interactions with chain C- Hydrogen bonds: F:G.20, F:V.88, F:S.90, F:S.90
- Salt bridges: F:R.24, F:R.87, C:R.43
- 5 x SO4: SULFATE ION(Non-functional Binders)
SO4.6: 2 residues within 4Å:- Chain C: T.219, N.222
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:T.219, C:T.219, C:N.222
- Salt bridges: C:K.226
SO4.7: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)SO4.10: 2 residues within 4Å:- Chain D: H.97, R.149
2 PLIP interactions:2 interactions with chain D- Salt bridges: D:H.97, D:R.149
SO4.12: 2 residues within 4Å:- Chain E: T.220, N.222
2 PLIP interactions:2 interactions with chain E- Hydrogen bonds: E:N.222
- Salt bridges: E:K.226
SO4.15: 1 residues within 4Å:- Chain F: N.222
4 PLIP interactions:4 interactions with chain F- Hydrogen bonds: F:N.222
- Water bridges: F:K.226, F:K.226
- Salt bridges: F:K.226
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Stefanic, Z. et al., Crystallographic snapshots of ligand binding to hexameric purine nucleoside phosphorylase and kinetic studies give insight into the mechanism of catalysis. Sci Rep (2018)
- Release Date
- 2015-07-08
- Peptides
- Purine nucleoside phosphorylase DeoD-type: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.89 Å
- Oligo State
- homo-hexamer
- Ligands
- 4 x FMC: (1S)-1-(7-amino-1H-pyrazolo[4,3-d]pyrimidin-3-yl)-1,4-anhydro-D-ribitol(Non-covalent)
- 6 x PO4: PHOSPHATE ION(Non-functional Binders)
- 5 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Stefanic, Z. et al., Crystallographic snapshots of ligand binding to hexameric purine nucleoside phosphorylase and kinetic studies give insight into the mechanism of catalysis. Sci Rep (2018)
- Release Date
- 2015-07-08
- Peptides
- Purine nucleoside phosphorylase DeoD-type: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F