- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.99 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x DU- DU- DU- DU- BRU- DG: DNA (5'-D(*UP*UP*UP*UP*(BRU)P*DG*U)-3')(Non-covalent)
- 5 x DIO: 1,4-DIETHYLENE DIOXIDE(Non-covalent)
DIO.3: 8 residues within 4Å:- Chain A: N.106, Y.107, L.108, N.109, K.130, G.135, L.136, S.137
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:S.137
- Water bridges: A:D.110
DIO.4: 4 residues within 4Å:- Chain A: P.2, A.6, Y.90, Q.91
1 PLIP interactions:1 interactions with chain A- Water bridges: A:Q.91
DIO.5: 5 residues within 4Å:- Chain A: K.114, L.123, K.124, A.125, F.126
No protein-ligand interaction detected (PLIP)DIO.10: 4 residues within 4Å:- Chain B: K.114, L.123, K.124, F.126
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:K.114
- Water bridges: B:F.126
DIO.11: 7 residues within 4Å:- Chain B: N.106, Y.107, L.108, N.109, G.135, L.136, S.137
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:S.137
- 6 x SO4: SULFATE ION(Non-functional Binders)
SO4.6: 2 residues within 4Å:- Chain A: K.83, R.85
7 PLIP interactions:7 interactions with chain A- Water bridges: A:K.83, A:K.83, A:K.83, A:K.83, A:R.85
- Salt bridges: A:K.83, A:R.85
SO4.7: 3 residues within 4Å:- Chain A: G.4, S.5, R.8
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:S.5
- Water bridges: A:A.6, A:R.8, A:R.8
- Salt bridges: A:R.8
SO4.8: 3 residues within 4Å:- Chain A: M.70, R.86, I.148
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:R.86
SO4.13: 4 residues within 4Å:- Chain B: R.7, R.61, S.62, V.63
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:V.63
- Salt bridges: B:R.7
SO4.14: 2 residues within 4Å:- Chain B: K.83, R.85
2 PLIP interactions:2 interactions with chain B- Salt bridges: B:K.83, B:R.85
SO4.15: 2 residues within 4Å:- Chain B: M.70, R.86
1 PLIP interactions:1 interactions with chain B- Salt bridges: B:R.86
- 2 x GOL: GLYCEROL(Non-functional Binders)
GOL.9: 4 residues within 4Å:- Chain A: I.49, N.50, Q.51, D.52
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Q.51, A:D.52, A:D.52
- Water bridges: A:N.50
GOL.16: 5 residues within 4Å:- Chain B: Q.48, I.49, N.50, F.55, F.57
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Q.48, B:I.49
- 1 x CPQ: N,N-BIS(3-D-GLUCONAMIDOPROPYL)DEOXYCHOLAMIDE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Agrawal, A.A. et al., Structure-guided U2AF65 variant improves recognition and splicing of a defective pre-mRNA. Proc.Natl.Acad.Sci.USA (2014)
- Release Date
- 2014-11-26
- Peptides
- Splicing factor U2AF 65 kDa subunit: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.99 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x DU- DU- DU- DU- BRU- DG: DNA (5'-D(*UP*UP*UP*UP*(BRU)P*DG*U)-3')(Non-covalent)
- 5 x DIO: 1,4-DIETHYLENE DIOXIDE(Non-covalent)
- 6 x SO4: SULFATE ION(Non-functional Binders)
- 2 x GOL: GLYCEROL(Non-functional Binders)
- 1 x CPQ: N,N-BIS(3-D-GLUCONAMIDOPROPYL)DEOXYCHOLAMIDE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Agrawal, A.A. et al., Structure-guided U2AF65 variant improves recognition and splicing of a defective pre-mRNA. Proc.Natl.Acad.Sci.USA (2014)
- Release Date
- 2014-11-26
- Peptides
- Splicing factor U2AF 65 kDa subunit: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B