SMTL ID : 4tug.1

Crystal structure of MjMre11-DNA2 complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.55 Å

Oligo State

homo-hexamer

Ligands

12 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 6 residues within 4Å: Chain A: D.12, D.53, N.88, H.162, H.190 Ligands: MG.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.53, A:H.162, A:H.190 MG.2: 5 residues within 4Å: Chain A: D.12, H.14, D.53, H.192 Ligands: MG.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.12, A:H.14, A:D.53, A:H.192 MG.3: 6 residues within 4Å: Chain B: D.12, D.53, N.88, H.162, H.190 Ligands: MG.4 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.53, B:H.162, B:H.190 MG.4: 5 residues within 4Å: Chain B: D.12, H.14, D.53, H.192 Ligands: MG.3 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.12, B:H.14, B:D.53, B:H.192 MG.5: 5 residues within 4Å: Chain C: D.53, N.88, H.162, H.190 Ligands: MG.6 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:D.53, C:H.162, C:H.190 MG.6: 5 residues within 4Å: Chain C: D.12, H.14, D.53, H.192 Ligands: MG.5 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:D.12, C:H.14, C:D.53, C:H.192 MG.7: 6 residues within 4Å: Chain D: D.12, D.53, N.88, H.162, H.190 Ligands: MG.8 4 PLIP interactions: 3 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:D.53, D:H.162, D:H.190, H2O.1 MG.8: 5 residues within 4Å: Chain D: D.12, H.14, D.53, H.192 Ligands: MG.7 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:D.12, D:H.14, D:D.53, D:H.192, H2O.1 MG.9: 5 residues within 4Å: Chain E: D.53, N.88, H.162, H.190 Ligands: MG.10 3 PLIP interactions: 3 interactions with chain E Metal complexes: E:D.53, E:H.162, E:H.190 MG.10: 5 residues within 4Å: Chain E: D.12, H.14, D.53, H.192 Ligands: MG.9 5 PLIP interactions: 4 interactions with chain E, 1 Ligand-Water interactions Metal complexes: E:D.12, E:H.14, E:D.53, E:H.192, H2O.1 MG.11: 6 residues within 4Å: Chain F: D.12, D.53, N.88, H.162, H.190 Ligands: MG.12 3 PLIP interactions: 3 interactions with chain F Metal complexes: F:D.53, F:H.162, F:H.190 MG.12: 6 residues within 4Å: Chain F: D.12, H.14, D.53, H.190, H.192 Ligands: MG.11 5 PLIP interactions: 4 interactions with chain F, 1 Ligand-Water interactions Metal complexes: F:D.12, F:H.14, F:D.53, F:H.192, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sung, S. et al., DNA end recognition by the Mre11 nuclease dimer: insights into resection and repair of damaged DNA. Embo J. (2014)

Release Date

2014-10-15

Peptides

DNA double-strand break repair protein Mre11: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
A

C
B

D
D

E
E

F
F

DNA double-strand break repair protein Mre11

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