SMTL ID : 4tv5.1

Crystal Structure of Citrate Synthase SbnG

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-hexamer

Ligands

12 x CA: CALCIUM ION(Non-covalent)

CA.1: 2 residues within 4Å: Chain A: E.151, D.177 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.151, A:D.177, H2O.1, H2O.2, H2O.6 CA.2: 6 residues within 4Å: Chain A: S.6, L.7, K.8, R.90, H.143, M.145 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:R.90, A:H.143 CA.3: 2 residues within 4Å: Chain B: E.151, D.177 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:E.151, B:D.177, H2O.6, H2O.7, H2O.11 CA.4: 6 residues within 4Å: Chain B: S.6, L.7, K.8, R.90, H.143, M.145 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:R.90, B:H.143 CA.5: 2 residues within 4Å: Chain C: E.151, D.177 5 PLIP interactions: 2 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:E.151, C:D.177, H2O.1, H2O.12, H2O.12 CA.6: 6 residues within 4Å: Chain C: S.6, L.7, K.8, R.90, H.143, M.145 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:R.90, C:H.143 CA.7: 2 residues within 4Å: Chain D: E.151, D.177 5 PLIP interactions: 2 interactions with chain D, 3 Ligand-Water interactions Metal complexes: D:E.151, D:D.177, H2O.17, H2O.17, H2O.21 CA.8: 6 residues within 4Å: Chain D: S.6, L.7, K.8, R.90, H.143, M.145 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:R.90, D:H.143 CA.9: 2 residues within 4Å: Chain E: E.151, D.177 5 PLIP interactions: 2 interactions with chain E, 3 Ligand-Water interactions Metal complexes: E:E.151, E:D.177, H2O.22, H2O.23, H2O.27 CA.10: 6 residues within 4Å: Chain E: S.6, L.7, K.8, R.90, H.143, M.145 2 PLIP interactions: 2 interactions with chain E Metal complexes: E:R.90, E:H.143 CA.11: 2 residues within 4Å: Chain F: E.151, D.177 5 PLIP interactions: 2 interactions with chain F, 3 Ligand-Water interactions Metal complexes: F:E.151, F:D.177, H2O.16, H2O.27, H2O.28 CA.12: 6 residues within 4Å: Chain F: S.6, L.7, K.8, R.90, H.143, M.145 2 PLIP interactions: 2 interactions with chain F Metal complexes: F:R.90, F:H.143

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kobylarz, M.J. et al., SbnG, a Citrate Synthase in Staphylococcus aureus: A NEW FOLD ON AN OLD ENZYME. J.Biol.Chem. (2014)

Release Date

2014-10-29

Peptides

2-dehydro-3-deoxyglucarate aldolase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

2-dehydro-3-deoxyglucarate aldolase