SMTL ID : 4tvo.1

Structure of Malate Dehydrogenase from Mycobacterium tuberculosis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: R.93, R.99, R.163, H.188, G.228, S.239 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:R.93, A:R.93, A:S.239, A:S.239, A:S.239 Water bridges: A:G.228 Salt bridges: A:R.99, A:R.163, A:H.188 SO4.16: 4 residues within 4Å: Chain B: R.163, H.188, G.228, S.239 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:N.132, B:S.239 Water bridges: B:G.228, B:G.228, B:S.239 Salt bridges: B:R.163

22 x NA: SODIUM ION(Non-functional Binders)

NA.2: 5 residues within 4Å: Chain A: G.28, L.31, G.32, R.35, L.65 Ligand excluded by PLIP NA.3: 6 residues within 4Å: Chain A: L.159, N.162, S.242, A.246 Chain B: D.60, C.61 Ligand excluded by PLIP NA.4: 5 residues within 4Å: Chain A: M.142, A.145, I.148, R.150, F.153 Ligand excluded by PLIP NA.5: 2 residues within 4Å: Chain A: A.314, D.318 Ligand excluded by PLIP NA.6: 5 residues within 4Å: Chain A: T.223, K.226, R.227, A.230 Ligands: NA.7 Ligand excluded by PLIP NA.7: 4 residues within 4Å: Chain A: T.223, R.227, A.230 Ligands: NA.6 Ligand excluded by PLIP NA.8: 4 residues within 4Å: Chain A: Q.16, Y.19, S.20 Chain B: Y.19 Ligand excluded by PLIP NA.9: 2 residues within 4Å: Chain A: E.70, I.71 Ligand excluded by PLIP NA.10: 4 residues within 4Å: Chain A: E.217, I.221, P.222, R.308 Ligand excluded by PLIP NA.11: 3 residues within 4Å: Chain A: R.227 Chain B: M.56, D.59 Ligand excluded by PLIP NA.12: 3 residues within 4Å: Chain A: G.12, G.15, E.43 Ligand excluded by PLIP NA.13: 6 residues within 4Å: Chain A: R.93, R.99, A.225, K.226, G.228, A.229 Ligand excluded by PLIP NA.14: 2 residues within 4Å: Chain A: P.277, E.278 Ligand excluded by PLIP NA.15: 2 residues within 4Å: Chain A: G.279, R.320 Ligand excluded by PLIP NA.17: 5 residues within 4Å: Chain A: C.61 Chain B: N.162, S.245, D.249 Ligands: NA.18 Ligand excluded by PLIP NA.18: 7 residues within 4Å: Chain A: D.60, C.61 Chain B: L.159, N.162, S.242, A.246 Ligands: NA.17 Ligand excluded by PLIP NA.19: 6 residues within 4Å: Chain B: R.150, E.151, F.153, V.268, V.269, W.293 Ligand excluded by PLIP NA.20: 5 residues within 4Å: Chain B: L.25, G.28, S.29, L.30, L.31 Ligand excluded by PLIP NA.21: 3 residues within 4Å: Chain B: W.293, T.294, I.295 Ligand excluded by PLIP NA.22: 4 residues within 4Å: Chain B: T.11, G.12, L.42, E.43 Ligand excluded by PLIP NA.23: 2 residues within 4Å: Chain B: Q.16, I.17 Ligand excluded by PLIP NA.24: 5 residues within 4Å: Chain B: G.128, V.129, S.154, A.155, L.156 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ferraris, D.M. et al., Structures of citrate synthase and malate dehydrogenase of Mycobacterium tuberculosis. Proteins (2015)

Release Date

2015-01-14

Peptides

Malate dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Malate dehydrogenase