SMTL ID : 4tw0.4 (3 other biounits)

Crystal Structure of SCARB2 in Acidic Condition (pH4.8)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.65 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.1: 5 residues within 4Å: Chain A: N.32, V.50, L.96, R.98, T.134 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:T.134 Hydrogen bonds: A:T.134

1 x NAG- NAG- BMA- MAN- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-NAG.2: 9 residues within 4Å: Chain A: Q.27, Y.29, E.49, E.325, D.326, R.346, Y.374, N.376, S.378 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.325

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.3: 6 residues within 4Å: Chain A: K.208, C.209, N.213, Y.231, R.239, S.240 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 6 residues within 4Å: Chain A: Y.55, L.58, Y.81, V.82, W.142, N.170 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.5: 6 residues within 4Å: Chain A: I.277, L.283, N.289, S.291, I.292, Y.352 No protein-ligand interaction detected (PLIP)

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.6: 2 residues within 4Å: Chain A: N.268, C.282 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.268 NAG.7: 3 residues within 4Å: Chain A: D.184, L.187, N.188 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dang, M. et al., Molecular mechanism of SCARB2-mediated attachment and uncoating of EV71. Protein Cell (2014)

Release Date

2015-07-08

Peptides

Scavenger receptor class B member 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Scavenger receptor class B member 2

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