SMTL ID : 4tw3.1

Insights into Substrate and Metal Binding from the Crystal Structure of Cyanobacterial Aldehyde Deformylating Oxygenase with Substrate Bound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

2 x FE: FE (III) ION(Non-covalent)

FE.1: 6 residues within 4Å: Chain A: E.25, E.53, H.56, E.137 Ligands: FE.2, STE.3 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.25, A:E.53, A:H.56, A:E.137, A:E.137 FE.2: 6 residues within 4Å: Chain A: E.53, E.108, E.137, H.140 Ligands: FE.1, STE.3 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.53, A:E.108, A:E.108, A:E.137, A:H.140

1 x STE: STEARIC ACID(Non-covalent)

STE.3: 23 residues within 4Å: Chain A: Y.14, I.17, N.18, I.20, V.21, G.24, E.25, A.28, E.53, F.60, F.80, Q.103, I.107, E.108, F.110, A.111, A.114, Y.115, Y.118, E.137, M.186 Ligands: FE.1, FE.2 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:I.17, A:V.21, A:F.60, A:F.60, A:F.80, A:I.107, A:F.110, A:A.111, A:A.114, A:Y.115, A:Y.118, A:Y.118, A:Y.118 Hydrogen bonds: A:Q.103

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 6 residues within 4Å: Chain A: E.27, N.31, F.80, L.83, R.84, I.107 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.27, A:N.31

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Buer, B.C. et al., Insights into substrate and metal binding from the crystal structure of cyanobacterial aldehyde deformylating oxygenase with substrate bound. Acs Chem.Biol. (2014)

Release Date

2014-10-15

Peptides

Aldehyde decarbonylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Aldehyde decarbonylase