SMTL ID : 4txt.1

Crystal Structure of a GH48 cellobiohydrolase from Caldicellulosiruptor bescii

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x BGC- BGC- BGC: beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose(Non-functional Binders)

BGC-BGC-BGC.1: 14 residues within 4Å: Chain A: H.40, E.48, A.49, E.59, W.416, W.422, T.496, D.497, E.550, R.552, R.617, W.619 Ligands: EDO.2, BTB.12 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.40, A:H.40, A:E.59 Water bridges: A:E.59

10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: C.47, V.189, W.190, R.552, D.554 Ligands: BGC-BGC-BGC.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.190 EDO.3: 6 residues within 4Å: Chain A: W.66, W.241, W.245, E.429, Y.510, T.630 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.429 EDO.4: 6 residues within 4Å: Chain A: Y.294, Y.299, N.349, S.352, D.353, K.356 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.299, A:N.349 EDO.5: 5 residues within 4Å: Chain A: I.214, Y.277, W.317 Ligands: EDO.6, EDO.11 2 PLIP interactions: 2 interactions with chain A Water bridges: A:K.276, A:Y.304 EDO.6: 5 residues within 4Å: Chain A: A.110, T.111, W.317 Ligands: EDO.5, EDO.10 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.277 EDO.7: 7 residues within 4Å: Chain A: T.476, W.477, N.478, G.479, A.480, T.482 Ligands: EDO.8 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.476, A:N.478, A:A.480 EDO.8: 2 residues within 4Å: Chain A: T.476 Ligands: EDO.7 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.476 EDO.9: 3 residues within 4Å: Chain A: K.167, R.168, D.170 No protein-ligand interaction detected (PLIP) EDO.10: 3 residues within 4Å: Chain A: T.111, D.216 Ligands: EDO.6 No protein-ligand interaction detected (PLIP) EDO.11: 6 residues within 4Å: Chain A: N.179, F.181, Q.182, T.226, Y.304 Ligands: EDO.5 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.179, A:T.226, A:T.226 Water bridges: A:Q.182, A:Y.304

1 x BTB: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-covalent)

BTB.12: 9 residues within 4Å: Chain A: A.49, E.59, W.155, F.181, A.228, D.230, W.303, Y.328 Ligands: BGC-BGC-BGC.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.230 Water bridges: A:R.234 Salt bridges: A:D.230

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

An, J. et al., Crystallization and preliminary X-ray analysis of a processive cellobiohydrolase CbCBH48A from Caldicellulosiruptor bescii. To Be Published

Release Date

2014-08-06

Peptides

Glycoside hydrolase family 48: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glycoside hydrolase family 48

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