SMTL ID : 4tyb.1

An Ligand-observed Mass Spectrometry-based Approach Integrated into the Fragment Based Lead Discovery Pipeline

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.93 Å

Oligo State

homo-tetramer

Ligands

4 x 3B1: (2R)-morpholin-4-yl(phenyl)ethanenitrile(Non-covalent)

3B1.1: 7 residues within 4Å: Chain A: F.193, R.200, N.316, C.366, M.414, Y.415, Y.448 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.193, A:Y.448, A:Y.448 Hydrogen bonds: A:R.200, A:Y.415 3B1.2: 7 residues within 4Å: Chain B: F.193, R.200, C.366, S.368, M.414, Y.415, Y.448 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:F.193 pi-Stacking: B:Y.448 3B1.3: 7 residues within 4Å: Chain C: F.193, R.200, C.366, S.368, M.414, Y.415, Y.448 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:F.193 pi-Stacking: C:Y.448 3B1.4: 5 residues within 4Å: Chain D: R.200, C.366, M.414, Y.415, Y.448 3 PLIP interactions: 3 interactions with chain D Hydrophobic interactions: D:Y.448, D:Y.448 Hydrogen bonds: D:Y.448

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, X. et al., A ligand-observed mass spectrometry approach integrated into the fragment based lead discovery pipeline. Sci Rep (2015)

Release Date

2015-05-20

Peptides

Polyprotein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Polyprotein

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