SMTL ID : 4u0s.1

Structure of Eukaryotic fic domain containing protein with ADP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.49 Å

Oligo State

homo-dimer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 17 residues within 4Å: Chain A: V.215, H.218, H.255, V.259, H.262, D.266, G.267, N.268, G.269, R.270, R.273, Y.298, Y.299, L.302, E.303, N.306 Ligands: MG.2 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:G.267, A:N.268, A:N.268, A:G.269, A:R.270, A:R.273, A:R.273, A:Y.298, A:Y.298, A:N.306 Water bridges: A:G.133, A:D.266, A:Y.299 Salt bridges: A:H.262, A:R.270 pi-Stacking: A:Y.299 ADP.4: 17 residues within 4Å: Chain B: G.133, V.215, H.218, V.259, H.262, D.266, G.267, N.268, G.269, R.270, R.273, Y.298, Y.299, L.302, E.303, N.306 Ligands: MG.5 15 PLIP interactions: 15 interactions with chain B Hydrogen bonds: B:D.266, B:G.267, B:N.268, B:N.268, B:G.269, B:R.270, B:R.273, B:Y.298, B:Y.298, B:N.306, B:N.306 Water bridges: B:G.133 Salt bridges: B:H.262, B:R.270 pi-Stacking: B:Y.299

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: D.266 Ligands: ADP.1 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.266, H2O.1 MG.5: 2 residues within 4Å: Chain B: D.266 Ligands: ADP.4 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.266, B:D.266, H2O.5, H2O.5

2 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.3: 4 residues within 4Å: Chain A: L.253, Y.256, K.257, Y.260 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.257 PG4.6: 3 residues within 4Å: Chain B: Y.256, K.257, Y.260 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.257

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bunney, T.D. et al., Crystal structure of the human, FIC-domain containing protein HYPE and implications for its functions. Structure (2014)

Release Date

2014-12-10

Peptides

Adenosine monophosphate-protein transferase FICD: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Adenosine monophosphate-protein transferase FICD