SMTL ID : 4u1y.1

Full length GluA2-FW-(R,R)-2b complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.90 Å

Oligo State

homo-tetramer

Ligands

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: I.345, N.346, V.368 No protein-ligand interaction detected (PLIP) NAG.4: 2 residues within 4Å: Chain B: N.335, N.346 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.335 NAG.8: 3 residues within 4Å: Chain D: Q.328, N.335, N.346 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:Q.328, D:N.335

4 x FWD: 2-AMINO-3-(5-FLUORO-2,4-DIOXO-3,4-DIHYDRO-2H-PYRIMIDIN-1-YL)-PROPIONIC ACID(Non-covalent)

FWD.2: 12 residues within 4Å: Chain A: Y.443, P.471, L.472, T.473, R.478, L.638, S.642, T.643, T.674, L.692, E.693, M.696 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:P.471, A:T.473, A:T.473, A:S.642, A:S.642, A:T.643, A:T.643, A:T.643, A:E.693, A:E.693 Salt bridges: A:R.478 FWD.5: 12 residues within 4Å: Chain B: Y.443, P.471, L.472, T.473, R.478, L.638, G.641, S.642, T.643, T.674, L.692, E.693 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:T.473, B:T.473, B:S.642, B:T.643, B:T.643, B:T.643, B:E.693, B:E.693 Salt bridges: B:R.478 FWD.7: 12 residues within 4Å: Chain C: Y.443, P.471, L.472, T.473, R.478, G.641, S.642, T.643, T.674, L.692, E.693, M.696 10 PLIP interactions: 10 interactions with chain C Hydrogen bonds: C:P.471, C:T.473, C:T.473, C:S.642, C:T.643, C:T.643, C:T.643, C:E.693, C:E.693 Salt bridges: C:R.478 FWD.9: 13 residues within 4Å: Chain D: Y.443, P.471, T.473, R.478, S.640, G.641, S.642, T.643, T.674, L.692, E.693, M.696, Y.720 9 PLIP interactions: 9 interactions with chain D Hydrogen bonds: D:T.473, D:T.473, D:S.642, D:T.643, D:T.643, D:T.643, D:E.693, D:E.693 Salt bridges: D:R.478

2 x FWF: N,N'-[biphenyl-4,4'-diyldi(2R)propane-2,1-diyl]dipropane-2-sulfonamide(Non-covalent)

FWF.3: 18 residues within 4Å: Chain A: I.474, P.487, M.489, S.490, S.717, K.718, G.719, L.739, S.742 Chain D: I.474, P.487, M.489, S.490, S.717, K.718, G.719, L.739, S.742 11 PLIP interactions: 4 interactions with chain D, 7 interactions with chain A Hydrophobic interactions: D:I.474, D:P.487, D:L.739, A:I.474, A:P.487, A:P.487, A:L.739, A:S.742 Hydrogen bonds: D:G.719, A:P.487, A:G.719 FWF.6: 19 residues within 4Å: Chain B: I.474, K.486, P.487, M.489, S.490, S.717, K.718, G.719, L.739, S.742 Chain C: I.474, P.487, M.489, S.490, S.717, K.718, G.719, L.739, S.742 11 PLIP interactions: 7 interactions with chain B, 4 interactions with chain C Hydrophobic interactions: B:I.474, B:K.486, B:P.487, B:P.487, B:L.739, C:I.474, C:P.487, C:L.739 Hydrogen bonds: B:P.487, B:G.719, C:G.719

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Durr, K.L. et al., Structure and Dynamics of AMPA Receptor GluA2 in Resting, Pre-Open, and Desensitized States. Cell (2014)

Release Date

2014-08-20

Peptides

Glutamate receptor 2: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Membrane

We predict this structure to be a membrane protein.
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Glutamate receptor 2