- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.13 Å
- Oligo State
- homo-hexamer
- Ligands
- 7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x 4WR: 1-[(2R)-2,3-diaminopropyl]-5-fluoropyrimidine-2,4(1H,3H)-dione
4WR.4: 11 residues within 4Å:- Chain A: H.7
- Chain B: T.93, T.94, G.95, F.161, Q.165, R.167, F.194, E.195, M.196, I.220
9 PLIP interactions:2 interactions with chain A, 7 interactions with chain B- Hydrogen bonds: A:H.7, B:Q.165, B:Q.165, B:R.167, B:R.167
- Water bridges: A:R.47, B:E.197, B:E.197, B:E.197
4WR.10: 15 residues within 4Å:- Chain C: H.7, R.47
- Chain D: T.94, G.95, F.161, Q.165, R.167, F.194, E.195, M.196, E.197, I.219, I.220
- Ligands: GOL.7, M5F.9
6 PLIP interactions:5 interactions with chain D, 1 interactions with chain C- Hydrogen bonds: D:Q.165, D:R.167, D:R.167, D:E.197
- Water bridges: D:M.196, C:R.47
- 2 x GOL: GLYCEROL(Non-functional Binders)
GOL.7: 10 residues within 4Å:- Chain C: R.47
- Chain D: P.24, G.25, D.26, G.67, R.90, V.91, E.197
- Ligands: M5F.9, 4WR.10
9 PLIP interactions:7 interactions with chain D, 2 interactions with chain C- Hydrogen bonds: D:G.25, D:D.26, D:G.67, D:R.90, C:R.47, C:R.47
- Water bridges: D:T.93, D:T.93, D:E.197
GOL.11: 2 residues within 4Å:- Chain E: K.250, K.253
2 PLIP interactions:2 interactions with chain E- Hydrogen bonds: E:K.253
- Water bridges: E:D.134
- 1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 2 x M5F: 1-[(2S)-2,3-diaminopropyl]-5-fluoropyrimidine-2,4(1H,3H)-dione
M5F.9: 15 residues within 4Å:- Chain C: F.6, H.7
- Chain D: T.93, T.94, G.95, F.161, Q.165, R.167, F.194, E.195, M.196, I.219, I.220
- Ligands: GOL.7, 4WR.10
7 PLIP interactions:5 interactions with chain D, 2 interactions with chain C- Hydrogen bonds: D:Q.165, D:R.167, D:R.167, C:H.7
- Water bridges: D:M.196, D:E.197, C:R.47
M5F.15: 12 residues within 4Å:- Chain E: F.6, H.7
- Chain F: T.93, G.95, F.161, Q.165, R.167, F.194, E.195, M.196, I.219, I.220
9 PLIP interactions:7 interactions with chain F, 2 interactions with chain E- Hydrogen bonds: F:Q.165, F:Q.165, F:R.167, F:R.167, E:H.7
- Water bridges: F:M.196, F:E.197, F:E.197, E:H.7
- 1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Prokofev, I.I. et al., X-ray structure uridine phosphorylase from Vibrio cholerae in complex with new anticancer compound at 1.17 A resolution. To Be Published
- Release Date
- 2015-07-29
- Peptides
- Uridine phosphorylase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.13 Å
- Oligo State
- homo-hexamer
- Ligands
- 7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x 4WR: 1-[(2R)-2,3-diaminopropyl]-5-fluoropyrimidine-2,4(1H,3H)-dione
- 2 x GOL: GLYCEROL(Non-functional Binders)
- 1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 2 x M5F: 1-[(2S)-2,3-diaminopropyl]-5-fluoropyrimidine-2,4(1H,3H)-dione
- 1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Prokofev, I.I. et al., X-ray structure uridine phosphorylase from Vibrio cholerae in complex with new anticancer compound at 1.17 A resolution. To Be Published
- Release Date
- 2015-07-29
- Peptides
- Uridine phosphorylase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F