SMTL ID : 4u3w.1

X-ray crystal structure of 2-aminomuconate 6-semialdehyde dehydrogenase from Burkholderia cenocepacia

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-tetramer

Ligands

12 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.1: 3 residues within 4Å: Chain A: L.42, E.200, I.349 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:L.42, A:E.200, H2O.6, H2O.8, H2O.13 MG.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.3: 3 residues within 4Å: Chain A: D.492, F.493, S.495 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.492, A:S.495, H2O.7, H2O.11, H2O.12 MG.5: 2 residues within 4Å: Chain B: L.42, E.200 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:L.42, B:E.200, H2O.21, H2O.22, H2O.22 MG.6: 2 residues within 4Å: Chain B: D.286, D.288 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.286, B:D.288, H2O.17, H2O.24, H2O.27 MG.7: 4 residues within 4Å: Chain B: D.492, F.493, S.495, L.497 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.492, B:S.495, H2O.19, H2O.20, H2O.29 MG.8: 3 residues within 4Å: Chain C: L.42, E.200, I.349 5 PLIP interactions: 2 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:L.42, C:E.200, H2O.34, H2O.36, H2O.41 MG.9: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.10: 3 residues within 4Å: Chain C: D.492, F.493, S.495 5 PLIP interactions: 2 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:D.492, C:S.495, H2O.35, H2O.39, H2O.41 MG.12: 2 residues within 4Å: Chain D: L.42, E.200 5 PLIP interactions: 2 interactions with chain D, 3 Ligand-Water interactions Metal complexes: D:L.42, D:E.200, H2O.49, H2O.50, H2O.50 MG.13: 2 residues within 4Å: Chain D: D.286, D.288 5 PLIP interactions: 2 interactions with chain D, 3 Ligand-Water interactions Metal complexes: D:D.286, D:D.288, H2O.45, H2O.52, H2O.56 MG.14: 4 residues within 4Å: Chain D: D.492, F.493, S.495, L.497 5 PLIP interactions: 2 interactions with chain D, 3 Ligand-Water interactions Metal complexes: D:D.492, D:S.495, H2O.47, H2O.48, H2O.57

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 4 residues within 4Å: Chain A: E.96, A.123, I.126, A.127 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.127 EDO.11: 4 residues within 4Å: Chain C: E.96, A.123, I.126, A.127 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:A.127

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fairman, J.W. et al., X-ray crystal structure of 2-aminomuconate 6-semialdehyde dehydrogenase from Burkholderia cenocepacia. To Be Published

Release Date

2014-07-30

Peptides

2-aminomuconate 6-semialdehyde dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

2-aminomuconate 6-semialdehyde dehydrogenase