SMTL ID : 4u4c.1

The molecular architecture of the TRAMP complex reveals the organization and interplay of its two catalytic activities

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-1-1-mer

Ligands

7 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: R.808, R.809, R.812, K.906 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:R.808, A:R.809, A:R.812 SO4.2: 7 residues within 4Å: Chain A: H.97, T.98, S.99, A.100, G.101, K.102, T.103 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.98, A:A.100, A:G.101, A:K.102, A:T.103 SO4.3: 4 residues within 4Å: Chain A: R.808, K.811, R.815, D.824 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.811, A:R.815 SO4.4: 2 residues within 4Å: Chain A: R.879 Chain B: T.19 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.879 SO4.5: 2 residues within 4Å: Chain A: R.582, K.693 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.693 SO4.6: 4 residues within 4Å: Chain A: H.401, S.402, T.427, T.429 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.402, A:T.429, A:T.429 SO4.7: 2 residues within 4Å: Chain A: R.812, R.815 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.815

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.8: 3 residues within 4Å: Chain A: H.572, Y.778, H.782 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.778 EDO.9: 4 residues within 4Å: Chain A: L.138, A.139, E.140, G.142 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.140

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.10: 2 residues within 4Å: Chain A: K.362, R.394 Ligand excluded by PLIP CL.11: 3 residues within 4Å: Chain A: I.126, K.127, R.951 Ligand excluded by PLIP

2 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.12: 3 residues within 4Å: Chain A: S.709, G.710, T.714 1 PLIP interactions: 1 interactions with chain A Water bridges: A:Q.711 PG4.13: 6 residues within 4Å: Chain A: T.148, G.149, T.152, E.957, K.961, H.987 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.961, A:H.987

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.14: 5 residues within 4Å: Chain A: F.416, Q.417, G.419, P.437, R.471 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:P.437, A:R.471

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Falk, S. et al., The Molecular Architecture of the TRAMP Complex Reveals the Organization and Interplay of Its Two Catalytic Activities. Mol.Cell (2014)

Release Date

2014-09-24

Peptides

ATP-dependent RNA helicase DOB1: A
Protein AIR2,Poly(A) RNA polymerase protein 2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

ATP-dependent RNA helicase DOB1

Protein AIR2,Poly(A) RNA polymerase protein 2