SMTL ID : 4u4l.3 (3 other biounits)

Crystal structure of the metallo-beta-lactamase NDM-1 in complex with a bisthiazolidine inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: D.100, C.184, H.226 Ligands: ZN.2, 3C7.4 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.100, A:C.184, A:H.226 ZN.2: 5 residues within 4Å: Chain A: H.96, H.98, H.165 Ligands: ZN.1, 3C7.4 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.96, A:H.98, A:H.165

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: R.210, G.213, A.214, R.232, I.235, T.236 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.213, A:R.232, A:R.232

1 x 3C7: (3R,5R,7aS)-5-(sulfanylmethyl)tetrahydro[1,3]thiazolo[4,3-b][1,3]thiazole-3-carboxylic acid(Non-covalent)

3C7.4: 11 residues within 4Å: Chain A: M.43, V.49, W.69, H.96, H.98, D.100, H.165, C.184, H.226 Ligands: ZN.1, ZN.2 4 PLIP interactions: 4 interactions with chain A Water bridges: A:K.187 Salt bridges: A:D.100, A:K.187, A:H.226

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kosmopoulou, M. et al., Crystal structure of the metallo-beta-lactamase NDM-1 in complex with a bisthiazolidine inhibitor. To Be Published

Release Date

2014-08-20

Peptides

Beta-lactamase NDM-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Beta-lactamase NDM-1

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