SMTL ID : 4u6v.1 (1 other biounit)

Mechanisms of Neutralization of a Human Anti-Alpha Toxin Antibody

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.56 Å

Oligo State

hetero-1-1-1-mer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: T.57, Y.58, Y.59, K.64 Chain B: Y.94 Ligands: SO4.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.57, A:Y.59 Salt bridges: A:K.64 SO4.2: 5 residues within 4Å: Chain A: E.157, V.159, P.176, A.177, L.187 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.154, A:E.157, A:V.159, A:A.177 SO4.3: 7 residues within 4Å: Chain A: T.57 Chain B: Y.94 Chain C: Y.191, N.201, T.263, N.264 Ligands: SO4.1 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:Y.191, C:T.263, C:N.264 SO4.4: 5 residues within 4Å: Chain C: Y.65, V.67, L.78, F.210, P.213 No protein-ligand interaction detected (PLIP) SO4.5: 6 residues within 4Å: Chain C: N.74, G.202, S.203, M.204, W.260, W.265 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:N.74, C:M.204

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Oganesyan, V. et al., Mechanisms of Neutralization of a Human Anti-alpha-toxin Antibody. J.Biol.Chem. (2014)

Release Date

2014-09-17

Peptides

Fab, antigen binding fragment, heavy chain: A
Fab, antigen binding fragment, light chain: B
Alpha-hemolysin: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

C
A

Fab, antigen binding fragment, heavy chain

Fab, antigen binding fragment, light chain

Alpha-hemolysin

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